Information for motif6


Reverse Opposite:

p-value:1e-233
log p-value:-5.372e+02
Information Content per bp:1.577
Number of Target Sequences with motif3713.0
Percentage of Target Sequences with motif10.50%
Number of Background Sequences with motif2098.7
Percentage of Background Sequences with motif5.98%
Average Position of motif in Targets99.8 +/- 54.3bp
Average Position of motif in Background99.0 +/- 60.3bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:1
Score:0.94
Offset:0
Orientation:forward strand
Alignment:CCATTGTT
CCWTTGTY

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.92
Offset:-1
Orientation:forward strand
Alignment:-CCATTGTT-
NCCATTGTTC

MA0143.3_Sox2/Jaspar

Match Rank:3
Score:0.91
Offset:0
Orientation:forward strand
Alignment:CCATTGTT
CCTTTGTT

MA0077.1_SOX9/Jaspar

Match Rank:4
Score:0.91
Offset:0
Orientation:forward strand
Alignment:CCATTGTT-
CCATTGTTC

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:5
Score:0.88
Offset:0
Orientation:forward strand
Alignment:CCATTGTT--
CCATTGTTNY

MA0515.1_Sox6/Jaspar

Match Rank:6
Score:0.88
Offset:0
Orientation:forward strand
Alignment:CCATTGTT--
CCATTGTTTT

MA0514.1_Sox3/Jaspar

Match Rank:7
Score:0.86
Offset:0
Orientation:forward strand
Alignment:CCATTGTT--
CCTTTGTTTT

PB0061.1_Sox11_1/Jaspar

Match Rank:8
Score:0.84
Offset:-4
Orientation:reverse strand
Alignment:----CCATTGTT-----
NNNTCCTTTGTTCTNNN

PB0071.1_Sox4_1/Jaspar

Match Rank:9
Score:0.84
Offset:-4
Orientation:reverse strand
Alignment:----CCATTGTT-----
TNNTCCTTTGTTCTNNT

MF0011.1_HMG_class/Jaspar

Match Rank:10
Score:0.83
Offset:2
Orientation:forward strand
Alignment:CCATTGTT
--ATTGTT