Information for motif8


Reverse Opposite:

p-value:1e-117
log p-value:-2.712e+02
Information Content per bp:1.715
Number of Target Sequences with motif985.0
Percentage of Target Sequences with motif2.79%
Number of Background Sequences with motif426.1
Percentage of Background Sequences with motif1.21%
Average Position of motif in Targets100.4 +/- 51.9bp
Average Position of motif in Background96.2 +/- 58.0bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.93
Offset:-1
Orientation:reverse strand
Alignment:-TKCCATGGCAAC-
TTGCCATGGCAACN

MA0509.1_Rfx1/Jaspar

Match Rank:2
Score:0.92
Offset:-2
Orientation:forward strand
Alignment:--TKCCATGGCAAC
GTTGCCATGGCAAC

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:3
Score:0.92
Offset:-1
Orientation:reverse strand
Alignment:-TKCCATGGCAAC-
TTGCCATGGCAACC

MA0600.1_RFX2/Jaspar

Match Rank:4
Score:0.91
Offset:-2
Orientation:forward strand
Alignment:--TKCCATGGCAAC-----
GTTGCCATGGCAACCGCGG

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:5
Score:0.87
Offset:-3
Orientation:reverse strand
Alignment:---TKCCATGGCAAC
KGTTGCCATGGCAAC

MA0510.1_RFX5/Jaspar

Match Rank:6
Score:0.86
Offset:0
Orientation:forward strand
Alignment:TKCCATGGCAAC---
CTCCCTGGCAACAGC

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:7
Score:0.86
Offset:-2
Orientation:reverse strand
Alignment:--TKCCATGGCAAC--
GTTGCCATGGCAACCG

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.85
Offset:2
Orientation:forward strand
Alignment:TKCCATGGCAAC--
--SCCTAGCAACAG

PB0055.1_Rfx4_1/Jaspar

Match Rank:9
Score:0.84
Offset:0
Orientation:forward strand
Alignment:TKCCATGGCAAC---
TACCATAGCAACGGT

PB0054.1_Rfx3_1/Jaspar

Match Rank:10
Score:0.79
Offset:-4
Orientation:forward strand
Alignment:----TKCCATGGCAAC-------
TGTGACCCTTAGCAACCGATTAA