Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 35357)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 34992)	% of Background Sequences with Motif
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-1121	-2.582e+03	0.0000	2673.0	7.56%	454.9	1.30%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-1054	-2.429e+03	0.0000	5115.0	14.47%	1677.4	4.78%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-1033	-2.379e+03	0.0000	6051.0	17.11%	2256.8	6.43%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-836	-1.927e+03	0.0000	4644.0	13.14%	1653.2	4.71%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-818	-1.884e+03	0.0000	3290.0	9.31%	924.5	2.63%
Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-642	-1.478e+03	0.0000	5433.0	15.37%	2441.1	6.95%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-393	-9.058e+02	0.0000	2336.0	6.61%	848.2	2.42%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-272	-6.272e+02	0.0000	6987.0	19.76%	4579.2	13.04%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-250	-5.769e+02	0.0000	3782.0	10.70%	2102.7	5.99%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-244	-5.624e+02	0.0000	3919.0	11.08%	2223.4	6.33%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e-242	-5.576e+02	0.0000	7823.0	22.13%	5410.3	15.40%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-240	-5.546e+02	0.0000	3526.0	9.97%	1937.5	5.52%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-239	-5.521e+02	0.0000	2577.0	7.29%	1256.4	3.58%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-237	-5.476e+02	0.0000	9177.0	25.96%	6606.5	18.81%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-225	-5.184e+02	0.0000	2363.0	6.68%	1139.5	3.24%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-209	-4.829e+02	0.0000	2669.0	7.55%	1389.6	3.96%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-204	-4.707e+02	0.0000	4713.0	13.33%	2973.6	8.47%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-203	-4.695e+02	0.0000	3589.0	10.15%	2090.1	5.95%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-202	-4.658e+02	0.0000	5933.0	16.78%	3983.8	11.34%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-182	-4.212e+02	0.0000	3831.0	10.84%	2346.5	6.68%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-132	-3.061e+02	0.0000	4637.0	13.12%	3206.8	9.13%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-131	-3.022e+02	0.0000	896.0	2.53%	349.8	1.00%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-127	-2.935e+02	0.0000	862.0	2.44%	334.5	0.95%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-126	-2.918e+02	0.0000	1714.0	4.85%	907.5	2.58%
Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-112	-2.596e+02	0.0000	3422.0	9.68%	2287.9	6.51%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-102	-2.370e+02	0.0000	9399.0	26.58%	7632.6	21.73%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-102	-2.366e+02	0.0000	789.0	2.23%	327.9	0.93%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-99	-2.298e+02	0.0000	1247.0	3.53%	640.7	1.82%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-95	-2.204e+02	0.0000	1034.0	2.92%	501.3	1.43%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-94	-2.176e+02	0.0000	2739.0	7.75%	1808.0	5.15%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-84	-1.935e+02	0.0000	1653.0	4.68%	985.2	2.81%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-77	-1.780e+02	0.0000	6416.0	18.15%	5105.8	14.54%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-72	-1.681e+02	0.0000	414.0	1.17%	145.6	0.41%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-72	-1.675e+02	0.0000	2857.0	8.08%	2007.9	5.72%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-71	-1.647e+02	0.0000	5536.0	15.66%	4356.3	12.40%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-68	-1.572e+02	0.0000	517.0	1.46%	213.8	0.61%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-66	-1.539e+02	0.0000	7078.0	20.02%	5797.2	16.51%
Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-65	-1.512e+02	0.0000	1120.0	3.17%	639.8	1.82%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-64	-1.478e+02	0.0000	3412.0	9.65%	2530.4	7.20%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-60	-1.398e+02	0.0000	1176.0	3.33%	697.3	1.99%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-60	-1.397e+02	0.0000	12953.0	36.64%	11409.1	32.49%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-60	-1.394e+02	0.0000	3428.0	9.70%	2567.4	7.31%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-55	-1.266e+02	0.0000	2126.0	6.01%	1486.1	4.23%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-54	-1.260e+02	0.0000	2253.0	6.37%	1594.1	4.54%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-52	-1.199e+02	0.0000	1149.0	3.25%	707.0	2.01%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-51	-1.189e+02	0.0000	4471.0	12.65%	3556.3	10.13%
Oct2(POU/Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-50	-1.172e+02	0.0000	690.0	1.95%	365.8	1.04%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-49	-1.143e+02	0.0000	6244.0	17.66%	5191.0	14.78%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-48	-1.114e+02	0.0000	361.0	1.02%	148.2	0.42%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-48	-1.110e+02	0.0000	3170.0	8.97%	2425.0	6.90%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-46	-1.059e+02	0.0000	5735.0	16.22%	4758.9	13.55%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-45	-1.045e+02	0.0000	6740.0	19.06%	5695.2	16.22%
SCL(HLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-43	-1.013e+02	0.0000	17905.0	50.64%	16481.7	46.93%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-42	-9.706e+01	0.0000	4667.0	13.20%	3817.8	10.87%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-41	-9.617e+01	0.0000	11889.0	33.63%	10630.9	30.27%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-39	-9.067e+01	0.0000	6476.0	18.32%	5516.8	15.71%
GFY-Staf/Promoters/Homer	RACTACAATTCCCAGAAKGC	1e-38	-8.753e+01	0.0000	368.0	1.04%	171.9	0.49%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-37	-8.612e+01	0.0000	1587.0	4.49%	1128.3	3.21%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-37	-8.550e+01	0.0000	158.0	0.45%	46.8	0.13%
Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-35	-8.234e+01	0.0000	1159.0	3.28%	781.4	2.22%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-35	-8.225e+01	0.0000	800.0	2.26%	494.1	1.41%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-31	-7.261e+01	0.0000	3194.0	9.03%	2580.5	7.35%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-30	-7.135e+01	0.0000	1115.0	3.15%	768.2	2.19%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-30	-7.107e+01	0.0000	2602.0	7.36%	2055.0	5.85%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-30	-7.095e+01	0.0000	12167.0	34.41%	11069.2	31.52%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-30	-6.920e+01	0.0000	3255.0	9.21%	2649.3	7.54%
Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-29	-6.682e+01	0.0000	392.0	1.11%	209.0	0.59%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-28	-6.610e+01	0.0000	1168.0	3.30%	825.0	2.35%
CTCF-SatelliteElement/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-28	-6.573e+01	0.0000	130.0	0.37%	40.7	0.12%
E-box(HLH)/Promoter/Homer	SSGGTCACGTGA	1e-28	-6.561e+01	0.0000	460.0	1.30%	259.4	0.74%
NF1:FOXA1/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-28	-6.511e+01	0.0000	236.0	0.67%	103.7	0.30%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-27	-6.382e+01	0.0000	1667.0	4.72%	1256.5	3.58%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-27	-6.303e+01	0.0000	1647.0	4.66%	1241.2	3.53%
Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-24	-5.729e+01	0.0000	4667.0	13.20%	4005.9	11.41%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-24	-5.724e+01	0.0000	3074.0	8.69%	2536.6	7.22%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-24	-5.700e+01	0.0000	4885.0	13.82%	4210.6	11.99%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-23	-5.519e+01	0.0000	1867.0	5.28%	1459.4	4.16%
Ap4(HLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-23	-5.431e+01	0.0000	5178.0	14.65%	4500.1	12.81%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-22	-5.284e+01	0.0000	4143.0	11.72%	3542.1	10.09%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-22	-5.224e+01	0.0000	5187.0	14.67%	4521.3	12.87%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-22	-5.131e+01	0.0000	3694.0	10.45%	3134.9	8.93%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-21	-4.970e+01	0.0000	398.0	1.13%	234.4	0.67%
Egr2/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-20	-4.818e+01	0.0000	1060.0	3.00%	778.9	2.22%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-20	-4.750e+01	0.0000	2786.0	7.88%	2318.0	6.60%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-18	-4.363e+01	0.0000	1154.0	3.26%	873.0	2.49%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-18	-4.342e+01	0.0000	533.0	1.51%	350.1	1.00%
GATA:SCL/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-17	-4.110e+01	0.0000	426.0	1.20%	269.1	0.77%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-17	-4.036e+01	0.0000	10797.0	30.54%	9992.4	28.45%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-17	-3.992e+01	0.0000	1461.0	4.13%	1154.3	3.29%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-16	-3.779e+01	0.0000	680.0	1.92%	483.5	1.38%
Ptf1a(HLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-16	-3.769e+01	0.0000	10650.0	30.12%	9875.2	28.12%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-15	-3.678e+01	0.0000	8745.0	24.73%	8036.1	22.88%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-15	-3.507e+01	0.0000	6446.0	18.23%	5839.3	16.63%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-15	-3.502e+01	0.0000	635.0	1.80%	452.1	1.29%
GATA-IR3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-15	-3.490e+01	0.0000	326.0	0.92%	201.9	0.57%
FOXA1:AR/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-15	-3.471e+01	0.0000	165.0	0.47%	82.0	0.23%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-14	-3.427e+01	0.0000	2252.0	6.37%	1894.0	5.39%
USF1(HLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-14	-3.388e+01	0.0000	1624.0	4.59%	1324.9	3.77%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-14	-3.353e+01	0.0000	4792.0	13.55%	4275.3	12.17%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-13	-3.157e+01	0.0000	899.0	2.54%	688.7	1.96%
MyoG(HLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-13	-3.101e+01	0.0000	4643.0	13.13%	4153.7	11.83%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-13	-3.059e+01	0.0000	7867.0	22.25%	7247.4	20.64%
E2A(HLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-13	-3.016e+01	0.0000	6502.0	18.39%	5936.6	16.90%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-12	-2.802e+01	0.0000	1018.0	2.88%	805.6	2.29%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-11	-2.750e+01	0.0000	3033.0	8.58%	2659.7	7.57%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-11	-2.750e+01	0.0000	4263.0	12.06%	3820.8	10.88%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-11	-2.731e+01	0.0000	1888.0	5.34%	1597.0	4.55%
GATA-DR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-11	-2.661e+01	0.0000	168.0	0.48%	93.2	0.27%
NRF1/Promoter/Homer	STGCGCATGCGC	1e-11	-2.655e+01	0.0000	1204.0	3.41%	977.9	2.78%
GATA-IR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-11	-2.632e+01	0.0000	205.0	0.58%	121.9	0.35%
MyoD(HLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-10	-2.523e+01	0.0000	3648.0	10.32%	3255.8	9.27%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-10	-2.519e+01	0.0000	2204.0	6.23%	1900.8	5.41%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-10	-2.517e+01	0.0000	2349.0	6.64%	2035.4	5.80%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-10	-2.508e+01	0.0000	7107.0	20.10%	6569.5	18.71%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e-10	-2.447e+01	0.0000	1123.0	3.18%	913.5	2.60%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-10	-2.420e+01	0.0000	1811.0	5.12%	1543.0	4.39%
bHLHE40(HLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-10	-2.377e+01	0.0000	1123.0	3.18%	916.2	2.61%
OCT4-SOX2-TCF-NANOG((POU/Homeobox/HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-9	-2.278e+01	0.0000	279.0	0.79%	185.5	0.53%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-9	-2.158e+01	0.0000	2698.0	7.63%	2386.2	6.79%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-9	-2.146e+01	0.0000	1116.0	3.16%	920.3	2.62%
HNF4a(NR/DR1)/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-9	-2.134e+01	0.0000	1567.0	4.43%	1333.2	3.80%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-9	-2.075e+01	0.0000	139.0	0.39%	79.8	0.23%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-8	-2.025e+01	0.0000	4196.0	11.87%	3819.1	10.87%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-8	-2.004e+01	0.0000	2352.0	6.65%	2072.9	5.90%
TR4(NR/DR1)/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-8	-1.989e+01	0.0000	442.0	1.25%	328.9	0.94%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-8	-1.864e+01	0.0000	3066.0	8.67%	2757.4	7.85%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-7	-1.839e+01	0.0000	1872.0	5.29%	1634.4	4.65%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-7	-1.803e+01	0.0000	402.0	1.14%	299.7	0.85%
Srebp1a(HLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-7	-1.732e+01	0.0000	611.0	1.73%	484.1	1.38%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-7	-1.723e+01	0.0000	942.0	2.66%	782.1	2.23%
CLOCK(HLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-7	-1.696e+01	0.0000	1775.0	5.02%	1553.7	4.42%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-7	-1.633e+01	0.0000	753.0	2.13%	615.4	1.75%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-6	-1.567e+01	0.0000	950.0	2.69%	797.7	2.27%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-6	-1.562e+01	0.0000	6080.0	17.20%	5685.9	16.19%
PAX3:FKHR-fusion(Paired/Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-6	-1.531e+01	0.0000	419.0	1.19%	322.3	0.92%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-6	-1.473e+01	0.0000	5902.0	16.69%	5524.5	15.73%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e-6	-1.457e+01	0.0000	2140.0	6.05%	1914.4	5.45%
Pax7-long(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e-6	-1.457e+01	0.0000	43.0	0.12%	18.7	0.05%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-6	-1.454e+01	0.0000	787.0	2.23%	654.7	1.86%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-6	-1.386e+01	0.0000	3002.0	8.49%	2740.1	7.80%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e-5	-1.278e+01	0.0000	7051.0	19.94%	6669.6	18.99%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-5	-1.240e+01	0.0000	2702.0	7.64%	2468.0	7.03%
LXRE(NR/DR4)/BLRP(RAW)-LXRb-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-5	-1.211e+01	0.0000	164.0	0.46%	114.0	0.32%
BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer	NHAACBGYYV	1e-5	-1.200e+01	0.0000	4851.0	13.72%	4542.2	12.93%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-5	-1.188e+01	0.0000	598.0	1.69%	495.5	1.41%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-5	-1.181e+01	0.0000	3905.0	11.05%	3630.3	10.34%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-5	-1.161e+01	0.0000	5126.0	14.50%	4814.5	13.71%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-4	-1.144e+01	0.0000	5884.0	16.64%	5553.9	15.81%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e-4	-1.078e+01	0.0000	9327.0	26.38%	8930.7	25.43%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-4	-1.072e+01	0.0000	560.0	1.58%	466.4	1.33%
RXR(NR/DR1)/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-4	-9.662e+00	0.0001	4164.0	11.78%	3909.8	11.13%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-4	-9.466e+00	0.0001	1609.0	4.55%	1455.1	4.14%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-3	-8.861e+00	0.0002	885.0	2.50%	777.8	2.21%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-3	-8.819e+00	0.0002	1651.0	4.67%	1501.6	4.28%
RBPJ:Ebox/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-3	-8.756e+00	0.0002	1144.0	3.24%	1021.3	2.91%
FXR(NR/IR1)/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e-3	-8.686e+00	0.0003	1356.0	3.84%	1222.7	3.48%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-3	-8.466e+00	0.0003	393.0	1.11%	325.7	0.93%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e-3	-8.322e+00	0.0004	1227.0	3.47%	1103.3	3.14%
ETS:RUNX/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-3	-8.189e+00	0.0004	364.0	1.03%	300.3	0.86%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e-3	-7.921e+00	0.0006	725.0	2.05%	634.4	1.81%
Srebp2(HLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-3	-7.761e+00	0.0007	455.0	1.29%	385.3	1.10%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-3	-7.573e+00	0.0008	419.0	1.19%	353.5	1.01%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-3	-7.518e+00	0.0008	1700.0	4.81%	1561.4	4.45%
Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-3	-7.516e+00	0.0008	618.0	1.75%	537.7	1.53%
Pax8(Paired/Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e-3	-7.366e+00	0.0009	1217.0	3.44%	1102.4	3.14%
Max(HLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-3	-7.159e+00	0.0012	1918.0	5.42%	1774.4	5.05%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-3	-7.037e+00	0.0013	1904.0	5.39%	1762.6	5.02%
NFkB-p65-Rel(RHD)/LPS-exp(GSE23622)/Homer	GGAAATTCCC	1e-3	-6.921e+00	0.0014	201.0	0.57%	159.9	0.46%
PPARE(NR/DR1)/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-2	-6.781e+00	0.0017	3347.0	9.47%	3160.9	9.00%
BMAL1(HLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-2	-6.661e+00	0.0019	4840.0	13.69%	4616.4	13.14%
CEBP(bZIP)/CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-2	-6.637e+00	0.0019	1279.0	3.62%	1169.0	3.33%
E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e-2	-6.542e+00	0.0021	5703.0	16.13%	5462.6	15.55%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e-2	-5.673e+00	0.0049	54.0	0.15%	36.2	0.10%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-2	-5.474e+00	0.0059	476.0	1.35%	418.5	1.19%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-2	-5.465e+00	0.0059	3206.0	9.07%	3045.1	8.67%
GATA-DR8(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-2	-5.452e+00	0.0060	133.0	0.38%	104.6	0.30%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-2	-4.935e+00	0.0100	258.0	0.73%	219.2	0.62%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-2	-4.884e+00	0.0105	1062.0	3.00%	979.2	2.79%
c-Myc(HLH)/LNCAP-cMyc-ChIP-Seq(unpublished)/Homer	VCCACGTG	1e-2	-4.770e+00	0.0117	1842.0	5.21%	1732.3	4.93%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-2	-4.706e+00	0.0124	1598.0	4.52%	1497.4	4.26%
PRDM1/BMI1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-2	-4.680e+00	0.0126	1326.0	3.75%	1235.5	3.52%
PAX5(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-2	-4.654e+00	0.0129	1335.0	3.78%	1244.0	3.54%
n-Myc(HLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-2	-4.635e+00	0.0130	2171.0	6.14%	2053.2	5.85%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-1	-4.155e+00	0.0210	290.0	0.82%	253.7	0.72%
TRa(NR)/C17.2-TRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-1	-4.134e+00	0.0213	1420.0	4.02%	1333.9	3.80%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-1	-4.018e+00	0.0238	1012.0	2.86%	941.6	2.68%
ISRE(IRF)/ThioMac-LPS-exp(GSE23622)/HOMER	AGTTTCASTTTC	1e-1	-3.886e+00	0.0270	131.0	0.37%	108.5	0.31%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-1	-3.850e+00	0.0278	645.0	1.82%	591.4	1.68%
PAX5-shortForm(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-1	-3.786e+00	0.0295	361.0	1.02%	322.9	0.92%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-1	-3.756e+00	0.0303	536.0	1.52%	489.0	1.39%
NPAS2(HLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-1	-3.708e+00	0.0316	3198.0	9.05%	3072.9	8.75%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e-1	-3.517e+00	0.0378	230.0	0.65%	201.0	0.57%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e-1	-3.517e+00	0.0378	230.0	0.65%	201.0	0.57%
STAT6/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-1	-3.477e+00	0.0392	1314.0	3.72%	1240.4	3.53%
Reverb(NR/DR2)/BLRP(RAW)-Reverba-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e-1	-3.222e+00	0.0503	388.0	1.10%	352.5	1.00%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-1	-3.158e+00	0.0533	160.0	0.45%	138.5	0.39%
HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e-1	-3.126e+00	0.0548	824.0	2.33%	771.5	2.20%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-1	-2.700e+00	0.0835	1191.0	3.37%	1133.6	3.23%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-2.177e+00	0.1401	54.0	0.15%	46.0	0.13%
Pax7(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-2.147e+00	0.1438	127.0	0.36%	113.8	0.32%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-2.146e+00	0.1438	944.0	2.67%	902.6	2.57%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-1.995e+00	0.1656	145.0	0.41%	131.5	0.37%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e0	-1.969e+00	0.1691	169.0	0.48%	154.7	0.44%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-1.899e+00	0.1806	396.0	1.12%	373.3	1.06%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e0	-1.896e+00	0.1806	2298.0	6.50%	2235.3	6.36%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-1.894e+00	0.1806	281.0	0.79%	262.6	0.75%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-1.816e+00	0.1933	1236.0	3.50%	1194.1	3.40%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-1.791e+00	0.1972	134.0	0.38%	122.1	0.35%
GLI3(Zf)/GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-1.702e+00	0.2146	413.0	1.17%	392.2	1.12%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-1.534e+00	0.2527	1333.0	3.77%	1297.0	3.69%
GRE/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-1.530e+00	0.2527	554.0	1.57%	532.4	1.52%
Pax7-longest(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-1.507e+00	0.2570	24.0	0.07%	20.5	0.06%
NFkB-p50,p52(RHD)/p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e0	-1.394e+00	0.2864	431.0	1.22%	414.5	1.18%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-1.362e+00	0.2944	6403.0	18.11%	6313.9	17.98%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-1.336e+00	0.3007	6348.0	17.96%	6260.8	17.83%
CHR/Cell-Cycle-Exp/Homer	SRGTTTCAAA	1e0	-1.262e+00	0.3223	1157.0	3.27%	1130.3	3.22%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-1.045e+00	0.3985	1445.0	4.09%	1421.9	4.05%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-1.023e+00	0.4055	676.0	1.91%	662.4	1.89%
E2F(E2F)/Cell-Cycle-Exp/Homer	TTSGCGCGAAAA	1e0	-9.844e-01	0.4197	250.0	0.71%	243.3	0.69%
ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-9.600e-01	0.4281	8412.0	23.79%	8332.1	23.72%
ETS:E-box/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-9.392e-01	0.4352	297.0	0.84%	290.1	0.83%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-8.361e-01	0.4803	200.0	0.57%	196.5	0.56%
HIF2a(HLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-7.046e-01	0.5453	1083.0	3.06%	1075.4	3.06%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e0	-6.577e-01	0.5689	1888.0	5.34%	1877.8	5.35%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529/Homer	CYAAAAATAG	1e0	-6.092e-01	0.5946	673.0	1.90%	671.7	1.91%
NFAT:AP1/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-3.800e-01	0.7444	309.0	0.87%	315.3	0.90%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-3.375e-01	0.7733	3825.0	10.82%	3832.9	10.91%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-3.282e-01	0.7771	5126.0	14.50%	5130.0	14.61%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-2.921e-01	0.8021	5533.0	15.65%	5541.0	15.78%
bZIP:IRF/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-2.887e-01	0.8021	769.0	2.18%	782.4	2.23%
c-Myc/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-2.761e-01	0.8080	1365.0	3.86%	1382.0	3.93%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-2.651e-01	0.8134	1368.0	3.87%	1385.2	3.94%
ERE(NR/IR3)/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-2.310e-01	0.8380	758.0	2.14%	775.6	2.21%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-2.216e-01	0.8423	570.0	1.61%	586.6	1.67%
GRE(NR/IR3)/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-1.614e-01	0.8908	307.0	0.87%	323.2	0.92%
T1ISRE(IRF)/Ifnb-Exp/Homer	ACTTTCGTTTCT	1e0	-9.830e-02	0.9448	14.0	0.04%	19.7	0.06%
VDR(NR/DR3)/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-9.236e-02	0.9464	558.0	1.58%	586.5	1.67%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-3.445e-02	0.9986	1604.0	4.54%	1665.2	4.74%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-2.759e-02	1.0000	76.0	0.21%	93.8	0.27%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-1.977e-02	1.0000	912.0	2.58%	968.8	2.76%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-8.800e-05	1.0000	1989.0	5.63%	2141.3	6.10%
Mouse_Recombination_Hotspot/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-6.300e-05	1.0000	95.0	0.27%	137.0	0.39%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-2.000e-06	1.0000	1453.0	4.11%	1620.8	4.61%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-1.000e-06	1.0000	13040.0	36.88%	13379.2	38.09%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-0.000e+00	1.0000	362.0	1.02%	492.4	1.40%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-0.000e+00	1.0000	383.0	1.08%	555.9	1.58%