Information for motif1


Reverse Opposite:

p-value:1e-1096
log p-value:-2.525e+03
Information Content per bp:1.563
Number of Target Sequences with motif13661.0
Percentage of Target Sequences with motif33.93%
Number of Background Sequences with motif4689.4
Percentage of Background Sequences with motif18.95%
Average Position of motif in Targets99.9 +/- 53.2bp
Average Position of motif in Background99.8 +/- 69.6bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.34
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0005.1_Forkhead_class/Jaspar

Match Rank:1
Score:0.82
Offset:-2
Orientation:reverse strand
Alignment:--GYAAWYAVNN
AAATAAACA---

MA0031.1_FOXD1/Jaspar

Match Rank:2
Score:0.81
Offset:0
Orientation:forward strand
Alignment:GYAAWYAVNN
GTAAACAT--

FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer

Match Rank:3
Score:0.81
Offset:-2
Orientation:reverse strand
Alignment:--GYAAWYAVNN
NDGTAAACARRN

MA0125.1_Nobox/Jaspar

Match Rank:4
Score:0.81
Offset:-1
Orientation:reverse strand
Alignment:-GYAAWYAVNN
ACCAATTA---

MA0593.1_FOXP2/Jaspar

Match Rank:5
Score:0.80
Offset:-2
Orientation:forward strand
Alignment:--GYAAWYAVNN
AAGTAAACAAA-

Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer

Match Rank:6
Score:0.80
Offset:-2
Orientation:forward strand
Alignment:--GYAAWYAVNN
ADBTAATTAR--

Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer

Match Rank:7
Score:0.79
Offset:0
Orientation:reverse strand
Alignment:GYAAWYAVNN
GTAAACAG--

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:8
Score:0.79
Offset:1
Orientation:forward strand
Alignment:GYAAWYAVNN
-TAATTAGN-

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:9
Score:0.79
Offset:-3
Orientation:forward strand
Alignment:---GYAAWYAVNN
AAAGTAAACA---

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:10
Score:0.79
Offset:-3
Orientation:forward strand
Alignment:---GYAAWYAVNN
AAAGTAAACA---