Information for motif20


Reverse Opposite:

p-value:1e-150
log p-value:-3.456e+02
Information Content per bp:1.657
Number of Target Sequences with motif1326.0
Percentage of Target Sequences with motif3.29%
Number of Background Sequences with motif364.2
Percentage of Background Sequences with motif1.47%
Average Position of motif in Targets99.9 +/- 53.8bp
Average Position of motif in Background98.5 +/- 116.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.91
Offset:0
Orientation:forward strand
Alignment:GCCTAGCAAC--
SCCTAGCAACAG

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:2
Score:0.91
Offset:-2
Orientation:forward strand
Alignment:--GCCTAGCAAC---
CCGCATAGCAACGGA

PB0055.1_Rfx4_1/Jaspar

Match Rank:3
Score:0.89
Offset:-2
Orientation:forward strand
Alignment:--GCCTAGCAAC---
TACCATAGCAACGGT

MA0510.1_RFX5/Jaspar

Match Rank:4
Score:0.87
Offset:-2
Orientation:forward strand
Alignment:--GCCTAGCAAC---
CTCCCTGGCAACAGC

PB0054.1_Rfx3_1/Jaspar

Match Rank:5
Score:0.87
Offset:-6
Orientation:forward strand
Alignment:------GCCTAGCAAC-------
TGTGACCCTTAGCAACCGATTAA

MA0509.1_Rfx1/Jaspar

Match Rank:6
Score:0.73
Offset:-4
Orientation:forward strand
Alignment:----GCCTAGCAAC
GTTGCCATGGCAAC

MA0600.1_RFX2/Jaspar

Match Rank:7
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----GCCTAGCAAC-----
GTTGCCATGGCAACCGCGG

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:8
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---GCCTAGCAAC-
TTGCCATGGCAACN

PB0159.1_Rfx4_2/Jaspar

Match Rank:9
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GCCTAGCAAC---
TACCCTAGTTACCGA

ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:10
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GCCTAGCAAC
AGGCCTAG----