Information for motif5


Reverse Opposite:

p-value:1e-500
log p-value:-1.152e+03
Information Content per bp:1.801
Number of Target Sequences with motif10130.0
Percentage of Target Sequences with motif25.16%
Number of Background Sequences with motif3922.2
Percentage of Background Sequences with motif15.85%
Average Position of motif in Targets99.7 +/- 54.7bp
Average Position of motif in Background101.0 +/- 72.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.16
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0071.1_Sox4_1/Jaspar

Match Rank:1
Score:0.91
Offset:-4
Orientation:reverse strand
Alignment:----YSTTTGTT-----
TNNTCCTTTGTTCTNNT

PB0061.1_Sox11_1/Jaspar

Match Rank:2
Score:0.89
Offset:-4
Orientation:reverse strand
Alignment:----YSTTTGTT-----
NNNTCCTTTGTTCTNNN

MA0514.1_Sox3/Jaspar

Match Rank:3
Score:0.89
Offset:0
Orientation:forward strand
Alignment:YSTTTGTT--
CCTTTGTTTT

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:4
Score:0.88
Offset:0
Orientation:forward strand
Alignment:YSTTTGTT
CCWTTGTY

MA0143.3_Sox2/Jaspar

Match Rank:5
Score:0.87
Offset:0
Orientation:forward strand
Alignment:YSTTTGTT
CCTTTGTT

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:6
Score:0.85
Offset:0
Orientation:forward strand
Alignment:YSTTTGTT--
CCATTGTTNY

MA0442.1_SOX10/Jaspar

Match Rank:7
Score:0.83
Offset:1
Orientation:forward strand
Alignment:YSTTTGTT
-CTTTGT-

MA0515.1_Sox6/Jaspar

Match Rank:8
Score:0.83
Offset:0
Orientation:forward strand
Alignment:YSTTTGTT--
CCATTGTTTT

MF0011.1_HMG_class/Jaspar

Match Rank:9
Score:0.83
Offset:2
Orientation:forward strand
Alignment:YSTTTGTT
--ATTGTT

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.82
Offset:-1
Orientation:forward strand
Alignment:-YSTTTGTT-
NCCATTGTTC