Information for motif6


Reverse Opposite:

p-value:1e-451
log p-value:-1.040e+03
Information Content per bp:1.685
Number of Target Sequences with motif1743.0
Percentage of Target Sequences with motif4.33%
Number of Background Sequences with motif288.2
Percentage of Background Sequences with motif1.16%
Average Position of motif in Targets101.3 +/- 51.6bp
Average Position of motif in Background97.9 +/- 87.7bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.97
Offset:0
Orientation:forward strand
Alignment:RRCCAATCAGAR
AGCCAATCGG--

MA0502.1_NFYB/Jaspar

Match Rank:2
Score:0.94
Offset:-5
Orientation:forward strand
Alignment:-----RRCCAATCAGAR
AAATGGACCAATCAG--

POL004.1_CCAAT-box/Jaspar

Match Rank:3
Score:0.91
Offset:-3
Orientation:forward strand
Alignment:---RRCCAATCAGAR
ACTAGCCAATCA---

MA0060.2_NFYA/Jaspar

Match Rank:4
Score:0.88
Offset:-2
Orientation:reverse strand
Alignment:--RRCCAATCAGAR----
TGGACCAATCAGCACTCT

MA0161.1_NFIC/Jaspar

Match Rank:5
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:RRCCAATCAGAR
TGCCAA------

PH0089.1_Isx/Jaspar

Match Rank:6
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--RRCCAATCAGAR--
ACNNCTAATTAGNNNN

MA0038.1_Gfi1/Jaspar

Match Rank:7
Score:0.68
Offset:2
Orientation:forward strand
Alignment:RRCCAATCAGAR
--CAAATCACTG

PH0107.1_Msx2/Jaspar

Match Rank:8
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---RRCCAATCAGAR--
GAAGACCAATTAGCGCT

PH0026.1_Duxbl/Jaspar

Match Rank:9
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--RRCCAATCAGAR---
CGACCCAATCAACGGTG

PH0005.1_Barhl1/Jaspar

Match Rank:10
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---RRCCAATCAGAR-
AACAACCAATTAATTC