Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 40270)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 24735)	% of Background Sequences with Motif
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-1172	-2.700e+03	0.0000	6274.0	15.58%	1362.9	5.51%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-1127	-2.595e+03	0.0000	7376.0	18.32%	1819.8	7.35%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-888	-2.047e+03	0.0000	5503.0	13.67%	1295.1	5.23%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-850	-1.958e+03	0.0000	2472.0	6.14%	319.1	1.29%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-839	-1.934e+03	0.0000	8023.0	19.92%	2386.0	9.64%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-837	-1.929e+03	0.0000	6237.0	15.49%	1631.0	6.59%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-714	-1.646e+03	0.0000	4610.0	11.45%	1102.7	4.46%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-689	-1.588e+03	0.0000	3094.0	7.68%	580.1	2.34%
Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-688	-1.585e+03	0.0000	6476.0	16.08%	1891.3	7.64%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-670	-1.545e+03	0.0000	4250.0	10.55%	1003.9	4.06%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-420	-9.677e+02	0.0000	4777.0	11.86%	1489.3	6.02%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-412	-9.495e+02	0.0000	3354.0	8.33%	897.0	3.63%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-411	-9.482e+02	0.0000	7020.0	17.43%	2545.5	10.29%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-384	-8.843e+02	0.0000	8452.0	20.99%	3311.5	13.38%
Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-366	-8.434e+02	0.0000	4676.0	11.61%	1521.4	6.15%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-344	-7.937e+02	0.0000	7243.0	17.99%	2786.4	11.26%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-343	-7.902e+02	0.0000	2729.0	6.78%	718.7	2.90%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-340	-7.852e+02	0.0000	4192.0	10.41%	1341.9	5.42%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-334	-7.706e+02	0.0000	9538.0	23.69%	3988.5	16.12%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-316	-7.299e+02	0.0000	4664.0	11.58%	1593.7	6.44%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-288	-6.641e+02	0.0000	9517.0	23.64%	4099.3	16.57%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-282	-6.502e+02	0.0000	9155.0	22.74%	3923.6	15.86%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-270	-6.235e+02	0.0000	10178.0	25.28%	4505.1	18.21%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e-257	-5.921e+02	0.0000	9037.0	22.44%	3931.9	15.89%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-185	-4.273e+02	0.0000	16527.0	41.04%	8431.9	34.08%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-169	-3.893e+02	0.0000	3685.0	9.15%	1406.4	5.68%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-164	-3.787e+02	0.0000	14838.0	36.85%	7537.9	30.46%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-163	-3.765e+02	0.0000	5933.0	14.73%	2563.9	10.36%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-162	-3.748e+02	0.0000	15808.0	39.26%	8114.2	32.79%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-155	-3.583e+02	0.0000	7942.0	19.72%	3666.5	14.82%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-152	-3.521e+02	0.0000	2743.0	6.81%	987.9	3.99%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-152	-3.510e+02	0.0000	2178.0	5.41%	727.6	2.94%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-144	-3.321e+02	0.0000	9404.0	23.35%	4518.7	18.26%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-140	-3.240e+02	0.0000	4905.0	12.18%	2094.2	8.46%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-137	-3.172e+02	0.0000	4678.0	11.62%	1985.2	8.02%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-133	-3.076e+02	0.0000	815.0	2.02%	184.2	0.74%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-132	-3.052e+02	0.0000	1341.0	3.33%	391.9	1.58%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-128	-2.957e+02	0.0000	836.0	2.08%	196.8	0.80%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-123	-2.840e+02	0.0000	3498.0	8.69%	1422.7	5.75%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-123	-2.839e+02	0.0000	2621.0	6.51%	990.0	4.00%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-122	-2.823e+02	0.0000	3265.0	8.11%	1307.5	5.28%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-121	-2.788e+02	0.0000	2162.0	5.37%	775.1	3.13%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-112	-2.592e+02	0.0000	630.0	1.56%	135.2	0.55%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-107	-2.477e+02	0.0000	6979.0	17.33%	3325.7	13.44%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-106	-2.458e+02	0.0000	1157.0	2.87%	347.3	1.40%
GFY-Staf/Promoters/Homer	RACTACAATTCCCAGAAKGC	1e-105	-2.427e+02	0.0000	376.0	0.93%	58.1	0.23%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-96	-2.226e+02	0.0000	3450.0	8.57%	1472.3	5.95%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-94	-2.185e+02	0.0000	2888.0	7.17%	1190.1	4.81%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-90	-2.087e+02	0.0000	437.0	1.09%	85.5	0.35%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-83	-1.924e+02	0.0000	779.0	1.93%	219.9	0.89%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-80	-1.853e+02	0.0000	5176.0	12.85%	2450.7	9.90%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-79	-1.831e+02	0.0000	1676.0	4.16%	630.0	2.55%
E2A(HLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-77	-1.790e+02	0.0000	7487.0	18.59%	3749.5	15.15%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-75	-1.742e+02	0.0000	1075.0	2.67%	357.5	1.44%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-74	-1.726e+02	0.0000	7620.0	18.92%	3839.8	15.52%
SCL(HLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-73	-1.684e+02	0.0000	20563.0	51.07%	11518.3	46.55%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-73	-1.683e+02	0.0000	2485.0	6.17%	1047.2	4.23%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-72	-1.681e+02	0.0000	1260.0	3.13%	446.8	1.81%
Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-71	-1.638e+02	0.0000	5355.0	13.30%	2590.7	10.47%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-70	-1.613e+02	0.0000	156.0	0.39%	15.5	0.06%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-69	-1.609e+02	0.0000	2480.0	6.16%	1054.6	4.26%
Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-69	-1.600e+02	0.0000	1449.0	3.60%	542.2	2.19%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-69	-1.599e+02	0.0000	3271.0	8.12%	1468.1	5.93%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-66	-1.541e+02	0.0000	1040.0	2.58%	356.3	1.44%
E-box(HLH)/Promoter/Homer	SSGGTCACGTGA	1e-63	-1.461e+02	0.0000	453.0	1.13%	112.5	0.45%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-63	-1.459e+02	0.0000	510.0	1.27%	134.7	0.54%
E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e-60	-1.402e+02	0.0000	6848.0	17.01%	3480.7	14.07%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-57	-1.331e+02	0.0000	1316.0	3.27%	504.0	2.04%
NRF1/Promoter/Homer	STGCGCATGCGC	1e-57	-1.328e+02	0.0000	1123.0	2.79%	412.7	1.67%
Oct2(POU/Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-57	-1.326e+02	0.0000	905.0	2.25%	311.2	1.26%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-52	-1.200e+02	0.0000	5593.0	13.89%	2821.8	11.40%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-48	-1.125e+02	0.0000	2203.0	5.47%	979.3	3.96%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-48	-1.116e+02	0.0000	1207.0	3.00%	473.1	1.91%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-48	-1.113e+02	0.0000	2765.0	6.87%	1279.7	5.17%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-47	-1.095e+02	0.0000	2510.0	6.23%	1146.2	4.63%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-44	-1.024e+02	0.0000	4758.0	11.82%	2395.6	9.68%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-43	-9.971e+01	0.0000	2104.0	5.23%	947.3	3.83%
GATA:SCL/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-43	-9.916e+01	0.0000	624.0	1.55%	209.9	0.85%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-42	-9.874e+01	0.0000	542.0	1.35%	173.9	0.70%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-42	-9.736e+01	0.0000	2227.0	5.53%	1016.4	4.11%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-41	-9.463e+01	0.0000	3680.0	9.14%	1812.3	7.32%
Ptf1a(HLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-38	-8.953e+01	0.0000	12348.0	30.67%	6856.6	27.71%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-37	-8.640e+01	0.0000	3692.0	9.17%	1838.9	7.43%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-37	-8.586e+01	0.0000	5504.0	13.67%	2863.4	11.57%
Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-36	-8.450e+01	0.0000	1232.0	3.06%	517.6	2.09%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-36	-8.398e+01	0.0000	873.0	2.17%	339.2	1.37%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-36	-8.325e+01	0.0000	2266.0	5.63%	1062.8	4.30%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-35	-8.231e+01	0.0000	5970.0	14.83%	3142.0	12.70%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-35	-8.164e+01	0.0000	6048.0	15.02%	3188.1	12.88%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-35	-8.154e+01	0.0000	2926.0	7.27%	1425.8	5.76%
NF1:FOXA1/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-34	-7.903e+01	0.0000	271.0	0.67%	71.7	0.29%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-34	-7.837e+01	0.0000	735.0	1.83%	278.0	1.12%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e-33	-7.784e+01	0.0000	2618.0	6.50%	1264.0	5.11%
BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer	NHAACBGYYV	1e-32	-7.490e+01	0.0000	5798.0	14.40%	3066.9	12.40%
Ap4(HLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-32	-7.472e+01	0.0000	5960.0	14.80%	3160.5	12.77%
HNF4a(NR/DR1)/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-32	-7.388e+01	0.0000	2129.0	5.29%	1006.3	4.07%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-31	-7.301e+01	0.0000	2011.0	4.99%	944.5	3.82%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-30	-6.978e+01	0.0000	12356.0	30.69%	6948.6	28.08%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-30	-6.922e+01	0.0000	2864.0	7.11%	1419.5	5.74%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-29	-6.863e+01	0.0000	8536.0	21.20%	4685.3	18.94%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-29	-6.706e+01	0.0000	3493.0	8.67%	1776.4	7.18%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-28	-6.489e+01	0.0000	1279.0	3.18%	569.8	2.30%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e-27	-6.312e+01	0.0000	1365.0	3.39%	617.2	2.49%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-27	-6.268e+01	0.0000	914.0	2.27%	384.6	1.55%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-26	-6.038e+01	0.0000	1143.0	2.84%	505.7	2.04%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-25	-5.901e+01	0.0000	463.0	1.15%	167.7	0.68%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-25	-5.885e+01	0.0000	3722.0	9.24%	1929.6	7.80%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-25	-5.860e+01	0.0000	2594.0	6.44%	1295.2	5.23%
Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-25	-5.838e+01	0.0000	498.0	1.24%	184.8	0.75%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-24	-5.741e+01	0.0000	1042.0	2.59%	458.0	1.85%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-23	-5.430e+01	0.0000	6765.0	16.80%	3705.7	14.98%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-22	-5.216e+01	0.0000	4640.0	11.52%	2477.4	10.01%
OCT4-SOX2-TCF-NANOG((POU/Homeobox/HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-21	-4.974e+01	0.0000	462.0	1.15%	175.9	0.71%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-20	-4.829e+01	0.0000	4988.0	12.39%	2693.5	10.89%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-20	-4.783e+01	0.0000	2577.0	6.40%	1314.1	5.31%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-20	-4.759e+01	0.0000	735.0	1.83%	313.1	1.27%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-20	-4.687e+01	0.0000	1598.0	3.97%	773.8	3.13%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-20	-4.682e+01	0.0000	1552.0	3.85%	748.5	3.03%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-19	-4.601e+01	0.0000	2046.0	5.08%	1022.0	4.13%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-19	-4.559e+01	0.0000	3694.0	9.17%	1956.6	7.91%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-19	-4.398e+01	0.0000	1168.0	2.90%	546.8	2.21%
MyoG(HLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-18	-4.352e+01	0.0000	5286.0	13.13%	2886.6	11.67%
Pax7-long(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e-18	-4.324e+01	0.0000	84.0	0.21%	16.3	0.07%
TR4(NR/DR1)/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-16	-3.843e+01	0.0000	634.0	1.57%	274.3	1.11%
FOXA1:AR/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-16	-3.726e+01	0.0000	181.0	0.45%	56.6	0.23%
E2F(E2F)/Cell-Cycle-Exp/Homer	TTSGCGCGAAAA	1e-16	-3.716e+01	0.0000	266.0	0.66%	94.8	0.38%
MyoD(HLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-15	-3.575e+01	0.0000	3986.0	9.90%	2162.9	8.74%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-15	-3.566e+01	0.0000	113.0	0.28%	29.5	0.12%
CTCF-SatelliteElement/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-15	-3.559e+01	0.0000	143.0	0.36%	41.5	0.17%
Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-15	-3.548e+01	0.0000	856.0	2.13%	395.1	1.60%
GATA-DR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-15	-3.511e+01	0.0000	258.0	0.64%	92.9	0.38%
PPARE(NR/DR1)/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-14	-3.268e+01	0.0000	4058.0	10.08%	2217.3	8.96%
GATA-IR3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-14	-3.262e+01	0.0000	424.0	1.05%	175.1	0.71%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-13	-3.210e+01	0.0000	820.0	2.04%	382.5	1.55%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-13	-3.169e+01	0.0000	4789.0	11.89%	2649.9	10.71%
GATA-IR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-13	-3.011e+01	0.0000	255.0	0.63%	95.4	0.39%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-12	-2.968e+01	0.0000	9291.0	23.07%	5335.2	21.56%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-11	-2.703e+01	0.0000	7520.0	18.68%	4293.3	17.35%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-11	-2.693e+01	0.0000	2713.0	6.74%	1461.5	5.91%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-11	-2.689e+01	0.0000	1279.0	3.18%	645.1	2.61%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-11	-2.645e+01	0.0000	1915.0	4.76%	1005.6	4.06%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-11	-2.592e+01	0.0000	615.0	1.53%	284.6	1.15%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-11	-2.539e+01	0.0000	1286.0	3.19%	653.5	2.64%
Egr2/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-9	-2.122e+01	0.0000	995.0	2.47%	502.6	2.03%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-8	-1.848e+01	0.0000	3222.0	8.00%	1797.2	7.26%
RXR(NR/DR1)/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-8	-1.847e+01	0.0000	4957.0	12.31%	2823.1	11.41%
GATA-DR8(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-7	-1.744e+01	0.0000	181.0	0.45%	72.4	0.29%
Srebp1a(HLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-7	-1.739e+01	0.0000	734.0	1.82%	367.6	1.49%
Pax7(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e-7	-1.657e+01	0.0000	221.0	0.55%	93.2	0.38%
PAX3:FKHR-fusion(Paired/Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-6	-1.556e+01	0.0000	530.0	1.32%	259.1	1.05%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e-6	-1.436e+01	0.0000	8417.0	20.90%	4931.7	19.93%
Srebp2(HLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-6	-1.422e+01	0.0000	537.0	1.33%	266.1	1.08%
TRa(NR)/C17.2-TRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-6	-1.420e+01	0.0000	1600.0	3.97%	871.4	3.52%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-6	-1.385e+01	0.0000	235.0	0.58%	104.1	0.42%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-5	-1.287e+01	0.0000	1119.0	2.78%	599.9	2.42%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e-5	-1.276e+01	0.0000	10997.0	27.31%	6510.2	26.31%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e-5	-1.271e+01	0.0000	866.0	2.15%	455.5	1.84%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-5	-1.258e+01	0.0000	488.0	1.21%	243.2	0.98%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-5	-1.187e+01	0.0000	7153.0	17.76%	4193.3	16.95%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-4	-1.145e+01	0.0000	670.0	1.66%	348.5	1.41%
USF1(HLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-4	-1.130e+01	0.0000	1727.0	4.29%	959.5	3.88%
LXRE(NR/DR4)/BLRP(RAW)-LXRb-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-4	-1.090e+01	0.0000	186.0	0.46%	83.4	0.34%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-4	-1.086e+01	0.0000	9192.0	22.83%	5437.9	21.98%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-3	-8.782e+00	0.0002	2298.0	5.71%	1311.9	5.30%
STAT6/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-3	-8.161e+00	0.0004	1642.0	4.08%	927.6	3.75%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-3	-7.611e+00	0.0007	641.0	1.59%	345.1	1.39%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-3	-7.577e+00	0.0008	351.0	0.87%	180.4	0.73%
PAX5-shortForm(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-3	-7.515e+00	0.0008	411.0	1.02%	214.3	0.87%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-3	-7.369e+00	0.0009	615.0	1.53%	331.2	1.34%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-3	-7.163e+00	0.0011	194.0	0.48%	94.1	0.38%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-2	-6.806e+00	0.0016	6765.0	16.80%	4017.4	16.24%
PAX5(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-2	-6.548e+00	0.0020	1357.0	3.37%	769.3	3.11%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-2	-6.490e+00	0.0022	607.0	1.51%	330.9	1.34%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-2	-6.428e+00	0.0023	3936.0	9.77%	2312.8	9.35%
ISRE(IRF)/ThioMac-LPS-exp(GSE23622)/HOMER	AGTTTCASTTTC	1e-2	-6.294e+00	0.0026	141.0	0.35%	67.8	0.27%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e-2	-5.977e+00	0.0035	227.0	0.56%	115.7	0.47%
bZIP:IRF/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-2	-5.953e+00	0.0036	1015.0	2.52%	571.8	2.31%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-2	-5.744e+00	0.0044	7565.0	18.79%	4519.0	18.26%
ETS:RUNX/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-2	-5.706e+00	0.0046	381.0	0.95%	203.7	0.82%
CEBP(bZIP)/CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-2	-5.564e+00	0.0052	1578.0	3.92%	907.0	3.67%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-2	-5.443e+00	0.0059	1957.0	4.86%	1134.7	4.59%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e-2	-5.313e+00	0.0067	1568.0	3.89%	903.8	3.65%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-2	-5.080e+00	0.0084	178.0	0.44%	90.6	0.37%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e-2	-4.853e+00	0.0104	2345.0	5.82%	1372.8	5.55%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-2	-4.812e+00	0.0108	1593.0	3.96%	922.1	3.73%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-2	-4.808e+00	0.0108	1190.0	2.96%	682.5	2.76%
PRDM1/BMI1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-1	-4.452e+00	0.0153	1663.0	4.13%	967.5	3.91%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e-1	-4.206e+00	0.0195	1137.0	2.82%	655.3	2.65%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-1	-4.177e+00	0.0200	923.0	2.29%	528.3	2.14%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-1	-4.103e+00	0.0214	1509.0	3.75%	878.2	3.55%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-1	-4.023e+00	0.0231	1773.0	4.40%	1037.5	4.19%
GLI3(Zf)/GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e-1	-2.949e+00	0.0671	452.0	1.12%	257.6	1.04%
NFkB-p65-Rel(RHD)/LPS-exp(GSE23622)/Homer	GGAAATTCCC	1e-1	-2.701e+00	0.0856	222.0	0.55%	123.6	0.50%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-1	-2.648e+00	0.0897	1099.0	2.73%	646.9	2.61%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e-1	-2.647e+00	0.0897	300.0	0.75%	169.5	0.69%
ETS:E-box/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-1	-2.573e+00	0.0958	340.0	0.84%	193.2	0.78%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-1	-2.553e+00	0.0972	166.0	0.41%	91.3	0.37%
CLOCK(HLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-1	-2.547e+00	0.0973	1927.0	4.79%	1147.1	4.64%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e-1	-2.525e+00	0.0985	236.0	0.59%	132.1	0.53%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e-1	-2.525e+00	0.0985	236.0	0.59%	132.1	0.53%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e-1	-2.500e+00	0.1005	52.0	0.13%	26.7	0.11%
FXR(NR/IR1)/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e-1	-2.488e+00	0.1012	1461.0	3.63%	866.9	3.50%
CHR/Cell-Cycle-Exp/Homer	SRGTTTCAAA	1e0	-2.228e+00	0.1306	1482.0	3.68%	882.2	3.57%
T1ISRE(IRF)/Ifnb-Exp/Homer	ACTTTCGTTTCT	1e0	-1.971e+00	0.1681	23.0	0.06%	11.4	0.05%
bHLHE40(HLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-1.702e+00	0.2189	1150.0	2.86%	688.5	2.78%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-1.475e+00	0.2732	51.0	0.13%	28.1	0.11%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529/Homer	CYAAAAATAG	1e0	-1.449e+00	0.2790	851.0	2.11%	510.8	2.06%
RBPJ:Ebox/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-1.339e+00	0.3101	1210.0	3.01%	730.0	2.95%
NPAS2(HLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-1.274e+00	0.3294	3493.0	8.67%	2126.5	8.59%
VDR(NR/DR3)/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-1.174e+00	0.3623	659.0	1.64%	397.2	1.61%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-9.666e-01	0.4435	6578.0	16.34%	4028.3	16.28%
ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-8.915e-01	0.4758	8781.0	21.81%	5384.6	21.76%
NFAT:AP1/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-8.861e-01	0.4761	410.0	1.02%	249.4	1.01%
Max(HLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-7.338e-01	0.5519	2097.0	5.21%	1288.0	5.21%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-4.601e-01	0.7222	344.0	0.85%	215.9	0.87%
GRE(NR/IR3)/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-3.925e-01	0.7692	345.0	0.86%	217.2	0.88%
BMAL1(HLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-3.627e-01	0.7888	5352.0	13.29%	3310.6	13.38%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-3.022e-01	0.8341	284.0	0.71%	181.6	0.73%
Pax7-longest(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-2.069e-01	0.9133	37.0	0.09%	26.1	0.11%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-1.762e-01	0.9375	1547.0	3.84%	974.1	3.94%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-1.280e-01	0.9793	3935.0	9.77%	2461.1	9.95%
Mouse_Recombination_Hotspot/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-7.500e-02	1.0000	128.0	0.32%	89.1	0.36%
GRE/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-3.528e-02	1.0000	620.0	1.54%	409.6	1.66%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-2.564e-02	1.0000	5987.0	14.87%	3765.7	15.22%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-2.366e-02	1.0000	416.0	1.03%	281.5	1.14%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-2.013e-02	1.0000	719.0	1.79%	476.1	1.92%
c-Myc(HLH)/LNCAP-cMyc-ChIP-Seq(unpublished)/Homer	VCCACGTG	1e0	-1.730e-02	1.0000	1869.0	4.64%	1204.1	4.87%
HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-1.545e-02	1.0000	771.0	1.91%	511.7	2.07%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-7.335e-03	1.0000	15005.0	37.26%	9366.4	37.85%
Reverb(NR/DR2)/BLRP(RAW)-Reverba-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-3.592e-03	1.0000	446.0	1.11%	310.1	1.25%
n-Myc(HLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-6.610e-04	1.0000	2316.0	5.75%	1517.3	6.13%
c-Myc/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-6.270e-04	1.0000	1494.0	3.71%	995.8	4.02%
Pax8(Paired/Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-5.420e-04	1.0000	1230.0	3.05%	827.6	3.34%
ERE(NR/IR3)/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-1.480e-04	1.0000	815.0	2.02%	566.0	2.29%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-6.100e-05	1.0000	1542.0	3.83%	1041.9	4.21%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-1.900e-05	1.0000	758.0	1.88%	538.2	2.17%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e0	-4.000e-06	1.0000	2285.0	5.67%	1535.5	6.21%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-1.000e-06	1.0000	5316.0	13.20%	3465.9	14.01%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-1.000e-06	1.0000	2101.0	5.22%	1428.3	5.77%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-0.000e+00	1.0000	2352.0	5.84%	1592.0	6.43%
HIF2a(HLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-0.000e+00	1.0000	1093.0	2.71%	777.9	3.14%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-0.000e+00	1.0000	1698.0	4.22%	1201.7	4.86%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-0.000e+00	1.0000	467.0	1.16%	376.6	1.52%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-0.000e+00	1.0000	82.0	0.20%	95.3	0.39%
NFkB-p50,p52(RHD)/p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e0	-0.000e+00	1.0000	408.0	1.01%	358.8	1.45%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-0.000e+00	1.0000	1072.0	2.66%	828.2	3.35%