Information for motif11


Reverse Opposite:

p-value:1e-123
log p-value:-2.849e+02
Information Content per bp:1.439
Number of Target Sequences with motif1635.0
Percentage of Target Sequences with motif4.06%
Number of Background Sequences with motif857.1
Percentage of Background Sequences with motif2.14%
Average Position of motif in Targets100.2 +/- 55.4bp
Average Position of motif in Background102.5 +/- 59.1bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:1
Score:0.87
Offset:2
Orientation:forward strand
Alignment:TTGCTAATCC
--GCTAATCC

PH0035.1_Gsc/Jaspar

Match Rank:2
Score:0.83
Offset:-2
Orientation:forward strand
Alignment:--TTGCTAATCC-----
AATCGTTAATCCCTTTA

PH0139.1_Pitx3/Jaspar

Match Rank:3
Score:0.82
Offset:-2
Orientation:reverse strand
Alignment:--TTGCTAATCC----
GNNAGCTAATCCCCCN

PH0137.1_Pitx1/Jaspar

Match Rank:4
Score:0.82
Offset:-1
Orientation:reverse strand
Alignment:-TTGCTAATCC------
NTTGTTAATCCCTCTNN

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:5
Score:0.79
Offset:4
Orientation:forward strand
Alignment:TTGCTAATCC--
----TAATCCCN

PH0123.1_Obox3/Jaspar

Match Rank:6
Score:0.79
Offset:-1
Orientation:reverse strand
Alignment:-TTGCTAATCC------
ATAGTTAATCCCCCNNA

PH0015.1_Crx/Jaspar

Match Rank:7
Score:0.78
Offset:0
Orientation:reverse strand
Alignment:TTGCTAATCC------
AGGCTAATCCCCAANG

MA0467.1_Crx/Jaspar

Match Rank:8
Score:0.78
Offset:3
Orientation:reverse strand
Alignment:TTGCTAATCC----
---CTAATCCTCTT

PB0185.1_Tcf1_2/Jaspar

Match Rank:9
Score:0.76
Offset:2
Orientation:reverse strand
Alignment:TTGCTAATCC------
--NNTAATCCNGNCNN

PH0138.1_Pitx2/Jaspar

Match Rank:10
Score:0.76
Offset:-2
Orientation:reverse strand
Alignment:--TTGCTAATCC-----
GNNNATTAATCCCTNCN