Information for motif4


Reverse Opposite:

p-value:1e-561
log p-value:-1.294e+03
Information Content per bp:1.562
Number of Target Sequences with motif9578.0
Percentage of Target Sequences with motif23.79%
Number of Background Sequences with motif5703.7
Percentage of Background Sequences with motif14.25%
Average Position of motif in Targets100.4 +/- 53.7bp
Average Position of motif in Background98.1 +/- 61.4bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.21
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer

Match Rank:1
Score:0.94
Offset:0
Orientation:forward strand
Alignment:DDCTAATTAG
ADBTAATTAR

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:2
Score:0.92
Offset:3
Orientation:forward strand
Alignment:DDCTAATTAG-
---TAATTAGN

PB0031.1_Hoxa3_1/Jaspar

Match Rank:3
Score:0.89
Offset:-3
Orientation:forward strand
Alignment:---DDCTAATTAG-
TGGAGGTAATTAAC

PH0050.1_Hoxa3/Jaspar

Match Rank:4
Score:0.88
Offset:-3
Orientation:forward strand
Alignment:---DDCTAATTAG-
TTGAGGTAATTAGT

PH0133.1_Pax7/Jaspar

Match Rank:5
Score:0.88
Offset:-3
Orientation:reverse strand
Alignment:---DDCTAATTAG----
NNNTNCTAATTAGNTCN

PH0074.1_Hoxd1/Jaspar

Match Rank:6
Score:0.87
Offset:-3
Orientation:reverse strand
Alignment:---DDCTAATTAG----
NNNAGCTAATTAGCTTA

PH0031.1_Evx1/Jaspar

Match Rank:7
Score:0.87
Offset:-2
Orientation:forward strand
Alignment:--DDCTAATTAG-----
AGAACTAATTAGTGGAC

PH0160.1_Shox2/Jaspar

Match Rank:8
Score:0.86
Offset:-3
Orientation:reverse strand
Alignment:---DDCTAATTAG----
NNNAATTAATTAANNNG

PH0175.1_Vax2/Jaspar

Match Rank:9
Score:0.86
Offset:-3
Orientation:forward strand
Alignment:---DDCTAATTAG---
GTGCACTAATTAAGAC

PH0097.1_Lhx6_2/Jaspar

Match Rank:10
Score:0.86
Offset:-3
Orientation:reverse strand
Alignment:---DDCTAATTAG----
NNNCGCTAATTAGNNGA