Information for motif5


Reverse Opposite:

p-value:1e-424
log p-value:-9.779e+02
Information Content per bp:1.825
Number of Target Sequences with motif8479.0
Percentage of Target Sequences with motif21.06%
Number of Background Sequences with motif5240.8
Percentage of Background Sequences with motif13.10%
Average Position of motif in Targets99.6 +/- 54.6bp
Average Position of motif in Background99.8 +/- 59.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.15
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0143.3_Sox2/Jaspar

Match Rank:1
Score:0.96
Offset:0
Orientation:forward strand
Alignment:CCTTTGTT
CCTTTGTT

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:2
Score:0.94
Offset:0
Orientation:forward strand
Alignment:CCTTTGTT
CCWTTGTY

PB0061.1_Sox11_1/Jaspar

Match Rank:3
Score:0.94
Offset:-4
Orientation:reverse strand
Alignment:----CCTTTGTT-----
NNNTCCTTTGTTCTNNN

PB0071.1_Sox4_1/Jaspar

Match Rank:4
Score:0.94
Offset:-4
Orientation:reverse strand
Alignment:----CCTTTGTT-----
TNNTCCTTTGTTCTNNT

MA0514.1_Sox3/Jaspar

Match Rank:5
Score:0.93
Offset:0
Orientation:forward strand
Alignment:CCTTTGTT--
CCTTTGTTTT

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.91
Offset:-1
Orientation:forward strand
Alignment:-CCTTTGTT-
NCCATTGTTC

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:7
Score:0.89
Offset:0
Orientation:forward strand
Alignment:CCTTTGTT--
CCATTGTTNY

MA0515.1_Sox6/Jaspar

Match Rank:8
Score:0.88
Offset:0
Orientation:forward strand
Alignment:CCTTTGTT--
CCATTGTTTT

MA0442.1_SOX10/Jaspar

Match Rank:9
Score:0.87
Offset:1
Orientation:forward strand
Alignment:CCTTTGTT
-CTTTGT-

MA0077.1_SOX9/Jaspar

Match Rank:10
Score:0.83
Offset:0
Orientation:forward strand
Alignment:CCTTTGTT-
CCATTGTTC