Information for motif9


Reverse Opposite:

p-value:1e-230
log p-value:-5.308e+02
Information Content per bp:1.667
Number of Target Sequences with motif1090.0
Percentage of Target Sequences with motif2.71%
Number of Background Sequences with motif338.3
Percentage of Background Sequences with motif0.85%
Average Position of motif in Targets100.6 +/- 53.0bp
Average Position of motif in Background102.7 +/- 61.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0153.1_HNF1B/Jaspar

Match Rank:1
Score:0.87
Offset:0
Orientation:reverse strand
Alignment:GTTAATCATT--
GTTAAATATTAA

MA0046.1_HNF1A/Jaspar

Match Rank:2
Score:0.85
Offset:-1
Orientation:forward strand
Alignment:-GTTAATCATT---
GGTTAATAATTAAC

Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer

Match Rank:3
Score:0.84
Offset:-1
Orientation:forward strand
Alignment:-GTTAATCATT--
GGTTAAACATTAA

MF0010.1_Homeobox_class/Jaspar

Match Rank:4
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:GTTAATCATT
---AATTATT

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:5
Score:0.66
Offset:0
Orientation:forward strand
Alignment:GTTAATCATT
GKTAATGR--

PB0109.1_Bbx_2/Jaspar

Match Rank:6
Score:0.65
Offset:-6
Orientation:reverse strand
Alignment:------GTTAATCATT-
NNNNCTGTTAACNNTNN

PH0051.1_Hoxa4/Jaspar

Match Rank:7
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---GTTAATCATT----
CNAGTTAATTAATAANN

PH0137.1_Pitx1/Jaspar

Match Rank:8
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---GTTAATCATT----
NTTGTTAATCCCTCTNN

MA0476.1_FOS/Jaspar

Match Rank:9
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GTTAATCATT
TGTGACTCATT

MA0462.1_BATF::JUN/Jaspar

Match Rank:10
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:GTTAATCATT--
-TGAGTCATTTC