Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 40262)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 39997)	% of Background Sequences with Motif
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-1172	-2.699e+03	0.0000	7376.0	18.32%	2879.8	7.20%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-1150	-2.649e+03	0.0000	6274.0	15.58%	2229.1	5.57%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-901	-2.077e+03	0.0000	5503.0	13.67%	2077.3	5.19%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-889	-2.049e+03	0.0000	2472.0	6.14%	493.6	1.23%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-788	-1.815e+03	0.0000	6237.0	15.49%	2717.4	6.79%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-747	-1.722e+03	0.0000	8023.0	19.92%	4044.5	10.11%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-745	-1.716e+03	0.0000	4610.0	11.45%	1742.0	4.35%
Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-743	-1.713e+03	0.0000	6476.0	16.08%	2955.1	7.38%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-689	-1.588e+03	0.0000	3094.0	7.68%	938.1	2.34%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-681	-1.569e+03	0.0000	4250.0	10.55%	1608.3	4.02%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-442	-1.018e+03	0.0000	2729.0	6.78%	1014.8	2.54%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-383	-8.821e+02	0.0000	7020.0	17.43%	4203.8	10.50%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-382	-8.817e+02	0.0000	8452.0	20.99%	5359.6	13.39%
Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-354	-8.161e+02	0.0000	4676.0	11.61%	2489.6	6.22%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-320	-7.386e+02	0.0000	4777.0	11.86%	2651.2	6.62%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-309	-7.132e+02	0.0000	4664.0	11.58%	2596.2	6.49%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-294	-6.783e+02	0.0000	7243.0	17.99%	4686.0	11.71%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-288	-6.649e+02	0.0000	9517.0	23.64%	6628.5	16.56%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-273	-6.305e+02	0.0000	9538.0	23.69%	6714.7	16.78%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-262	-6.056e+02	0.0000	10178.0	25.28%	7324.4	18.30%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e-256	-5.906e+02	0.0000	9037.0	22.44%	6361.3	15.90%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-177	-4.081e+02	0.0000	16527.0	41.04%	13698.5	34.23%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-173	-3.989e+02	0.0000	9155.0	22.74%	6901.1	17.24%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-166	-3.842e+02	0.0000	3354.0	8.33%	2022.9	5.05%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-150	-3.467e+02	0.0000	4678.0	11.62%	3152.4	7.88%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-150	-3.456e+02	0.0000	4192.0	10.41%	2754.3	6.88%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-137	-3.156e+02	0.0000	2178.0	5.41%	1218.5	3.04%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-134	-3.088e+02	0.0000	14838.0	36.85%	12433.7	31.07%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-131	-3.020e+02	0.0000	7942.0	19.72%	6080.7	15.19%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-125	-2.899e+02	0.0000	815.0	2.02%	308.7	0.77%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-120	-2.778e+02	0.0000	15808.0	39.26%	13478.9	33.68%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-116	-2.689e+02	0.0000	1341.0	3.33%	666.2	1.66%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-109	-2.512e+02	0.0000	3685.0	9.15%	2517.6	6.29%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-101	-2.346e+02	0.0000	836.0	2.08%	358.8	0.90%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-98	-2.261e+02	0.0000	2621.0	6.51%	1694.9	4.24%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-97	-2.244e+02	0.0000	630.0	1.56%	238.6	0.60%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-80	-1.864e+02	0.0000	1260.0	3.13%	698.8	1.75%
Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-79	-1.827e+02	0.0000	1449.0	3.60%	844.1	2.11%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-75	-1.747e+02	0.0000	9404.0	23.35%	7849.1	19.61%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-74	-1.708e+02	0.0000	779.0	1.93%	373.1	0.93%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-71	-1.655e+02	0.0000	2743.0	6.81%	1914.4	4.78%
SCL(HLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-69	-1.611e+02	0.0000	20563.0	51.07%	18669.1	46.65%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-68	-1.588e+02	0.0000	5933.0	14.73%	4725.9	11.81%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-65	-1.511e+02	0.0000	6979.0	17.33%	5705.3	14.26%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-61	-1.408e+02	0.0000	1316.0	3.27%	803.1	2.01%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-60	-1.391e+02	0.0000	3498.0	8.69%	2626.5	6.56%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-59	-1.376e+02	0.0000	510.0	1.27%	223.2	0.56%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-59	-1.375e+02	0.0000	4905.0	12.18%	3875.7	9.68%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-58	-1.339e+02	0.0000	1676.0	4.16%	1100.3	2.75%
Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-58	-1.339e+02	0.0000	5355.0	13.30%	4293.1	10.73%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-56	-1.294e+02	0.0000	2162.0	5.37%	1509.0	3.77%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-55	-1.280e+02	0.0000	1040.0	2.58%	610.9	1.53%
Oct2(POU/Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-53	-1.224e+02	0.0000	905.0	2.25%	516.9	1.29%
Ptf1a(HLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-52	-1.208e+02	0.0000	12348.0	30.67%	10896.2	27.23%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-52	-1.200e+02	0.0000	7620.0	18.92%	6430.8	16.07%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-50	-1.162e+02	0.0000	3265.0	8.11%	2490.6	6.22%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-49	-1.148e+02	0.0000	156.0	0.39%	35.7	0.09%
E2A(HLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-48	-1.106e+02	0.0000	7487.0	18.59%	6351.5	15.87%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-47	-1.105e+02	0.0000	5176.0	12.85%	4221.0	10.55%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-46	-1.074e+02	0.0000	3450.0	8.57%	2681.3	6.70%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-46	-1.063e+02	0.0000	542.0	1.35%	272.2	0.68%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-46	-1.061e+02	0.0000	2227.0	5.53%	1620.7	4.05%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-45	-1.044e+02	0.0000	2203.0	5.47%	1604.8	4.01%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-45	-1.039e+02	0.0000	2510.0	6.23%	1869.2	4.67%
Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-43	-9.976e+01	0.0000	498.0	1.24%	248.6	0.62%
NF1:FOXA1/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-42	-9.672e+01	0.0000	271.0	0.67%	103.3	0.26%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-40	-9.427e+01	0.0000	1157.0	2.87%	756.3	1.89%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-39	-9.179e+01	0.0000	2888.0	7.17%	2236.7	5.59%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-39	-9.153e+01	0.0000	2480.0	6.16%	1879.5	4.70%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-38	-8.811e+01	0.0000	735.0	1.83%	435.4	1.09%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-37	-8.739e+01	0.0000	2011.0	4.99%	1485.9	3.71%
HNF4a(NR/DR1)/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-37	-8.691e+01	0.0000	2129.0	5.29%	1588.2	3.97%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-35	-8.178e+01	0.0000	3271.0	8.12%	2612.6	6.53%
GATA:SCL/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-34	-7.955e+01	0.0000	624.0	1.55%	363.5	0.91%
Ap4(HLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-33	-7.824e+01	0.0000	5960.0	14.80%	5092.9	12.73%
E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e-32	-7.443e+01	0.0000	6848.0	17.01%	5944.9	14.86%
CTCF-SatelliteElement/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-30	-6.987e+01	0.0000	143.0	0.36%	45.3	0.11%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-29	-6.747e+01	0.0000	873.0	2.17%	578.5	1.45%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-28	-6.636e+01	0.0000	3680.0	9.14%	3046.2	7.61%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-28	-6.611e+01	0.0000	4758.0	11.82%	4039.6	10.09%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-28	-6.607e+01	0.0000	5593.0	13.89%	4816.4	12.04%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-28	-6.500e+01	0.0000	3694.0	9.17%	3065.2	7.66%
TR4(NR/DR1)/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-27	-6.339e+01	0.0000	634.0	1.57%	395.4	0.99%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-25	-5.916e+01	0.0000	1552.0	3.85%	1170.0	2.92%
GFY-Staf/Promoters/Homer	RACTACAATTCCCAGAAKGC	1e-24	-5.620e+01	0.0000	376.0	0.93%	209.2	0.52%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-22	-5.243e+01	0.0000	5504.0	13.67%	4814.7	12.03%
OCT4-SOX2-TCF-NANOG((POU/Homeobox/HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-22	-5.105e+01	0.0000	462.0	1.15%	281.7	0.70%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-21	-5.063e+01	0.0000	5970.0	14.83%	5265.2	13.16%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-21	-5.015e+01	0.0000	7520.0	18.68%	6740.7	16.84%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-21	-5.014e+01	0.0000	3493.0	8.67%	2953.0	7.38%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-21	-4.921e+01	0.0000	2765.0	6.87%	2290.5	5.72%
MyoG(HLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-20	-4.641e+01	0.0000	5286.0	13.13%	4648.3	11.62%
Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-19	-4.549e+01	0.0000	856.0	2.13%	612.4	1.53%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-19	-4.493e+01	0.0000	1207.0	3.00%	914.2	2.28%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-19	-4.484e+01	0.0000	2104.0	5.23%	1710.1	4.27%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-19	-4.409e+01	0.0000	1042.0	2.59%	774.1	1.93%
Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-18	-4.357e+01	0.0000	1232.0	3.06%	940.3	2.35%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-18	-4.335e+01	0.0000	1168.0	2.90%	885.4	2.21%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-18	-4.308e+01	0.0000	2594.0	6.44%	2163.5	5.41%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-18	-4.242e+01	0.0000	735.0	1.83%	518.4	1.30%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-18	-4.152e+01	0.0000	437.0	1.09%	277.2	0.69%
E-box(HLH)/Promoter/Homer	SSGGTCACGTGA	1e-17	-4.132e+01	0.0000	453.0	1.13%	290.1	0.72%
GATA-DR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-17	-3.960e+01	0.0000	258.0	0.64%	143.4	0.36%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-16	-3.870e+01	0.0000	1143.0	2.84%	878.1	2.19%
PAX3:FKHR-fusion(Paired/Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-16	-3.867e+01	0.0000	530.0	1.32%	357.3	0.89%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-16	-3.798e+01	0.0000	12356.0	30.69%	11520.9	28.79%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-16	-3.769e+01	0.0000	9192.0	22.83%	8451.8	21.12%
Egr2/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-15	-3.651e+01	0.0000	995.0	2.47%	756.8	1.89%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e-15	-3.556e+01	0.0000	1365.0	3.39%	1085.2	2.71%
PPARE(NR/DR1)/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-14	-3.264e+01	0.0000	4058.0	10.08%	3586.2	8.96%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-13	-3.218e+01	0.0000	3722.0	9.24%	3273.7	8.18%
RXR(NR/DR1)/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-13	-3.167e+01	0.0000	4957.0	12.31%	4444.3	11.11%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-13	-3.129e+01	0.0000	3692.0	9.17%	3251.3	8.12%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-12	-2.925e+01	0.0000	615.0	1.53%	450.5	1.13%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-12	-2.900e+01	0.0000	2266.0	5.63%	1935.4	4.84%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-12	-2.900e+01	0.0000	1075.0	2.67%	852.2	2.13%
USF1(HLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-12	-2.877e+01	0.0000	1727.0	4.29%	1441.2	3.60%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-12	-2.853e+01	0.0000	820.0	2.04%	629.3	1.57%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-12	-2.806e+01	0.0000	2577.0	6.40%	2229.8	5.57%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-12	-2.802e+01	0.0000	463.0	1.15%	325.8	0.81%
MyoD(HLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-12	-2.767e+01	0.0000	3986.0	9.90%	3556.0	8.89%
FOXA1:AR/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-11	-2.710e+01	0.0000	181.0	0.45%	102.3	0.26%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-11	-2.684e+01	0.0000	2485.0	6.17%	2151.9	5.38%
BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer	NHAACBGYYV	1e-11	-2.679e+01	0.0000	5798.0	14.40%	5289.5	13.22%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-11	-2.671e+01	0.0000	1915.0	4.76%	1624.8	4.06%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e-11	-2.667e+01	0.0000	2618.0	6.50%	2276.4	5.69%
GATA-IR3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-10	-2.400e+01	0.0000	424.0	1.05%	302.3	0.76%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-10	-2.375e+01	0.0000	4789.0	11.89%	4352.5	10.88%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-10	-2.367e+01	0.0000	4988.0	12.39%	4543.1	11.35%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-9	-2.296e+01	0.0000	914.0	2.27%	732.2	1.83%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-9	-2.200e+01	0.0000	2864.0	7.11%	2539.4	6.35%
NRF1/Promoter/Homer	STGCGCATGCGC	1e-8	-1.967e+01	0.0000	1123.0	2.79%	935.2	2.34%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-8	-1.943e+01	0.0000	8536.0	21.20%	8018.6	20.04%
Pax7(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e-8	-1.930e+01	0.0000	221.0	0.55%	145.3	0.36%
Srebp1a(HLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-8	-1.927e+01	0.0000	734.0	1.82%	587.0	1.47%
GATA-IR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-8	-1.908e+01	0.0000	255.0	0.63%	173.6	0.43%
Pax7-long(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e-8	-1.845e+01	0.0000	84.0	0.21%	43.0	0.11%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-7	-1.711e+01	0.0000	2046.0	5.08%	1806.8	4.51%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-7	-1.653e+01	0.0000	6048.0	15.02%	5641.1	14.10%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-7	-1.634e+01	0.0000	1279.0	3.18%	1096.3	2.74%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-7	-1.620e+01	0.0000	4640.0	11.52%	4286.3	10.71%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-6	-1.575e+01	0.0000	9291.0	23.07%	8807.2	22.01%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-6	-1.484e+01	0.0000	2926.0	7.27%	2658.6	6.64%
Srebp2(HLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-6	-1.479e+01	0.0000	537.0	1.33%	428.0	1.07%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-6	-1.455e+01	0.0000	6765.0	16.80%	6363.0	15.90%
bHLHE40(HLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-6	-1.443e+01	0.0000	1150.0	2.86%	989.0	2.47%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-6	-1.418e+01	0.0000	1598.0	3.97%	1407.0	3.52%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-6	-1.400e+01	0.0000	2713.0	6.74%	2463.6	6.16%
NFkB-p65-Rel(RHD)/LPS-exp(GSE23622)/Homer	GGAAATTCCC	1e-6	-1.397e+01	0.0000	222.0	0.55%	157.6	0.39%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-5	-1.322e+01	0.0000	113.0	0.28%	70.5	0.18%
PRDM1/BMI1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-5	-1.285e+01	0.0000	1663.0	4.13%	1478.4	3.69%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-5	-1.239e+01	0.0000	178.0	0.44%	124.5	0.31%
CLOCK(HLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-5	-1.193e+01	0.0000	1927.0	4.79%	1735.4	4.34%
GATA-DR8(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-4	-1.132e+01	0.0000	181.0	0.45%	129.4	0.32%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-4	-1.047e+01	0.0000	670.0	1.66%	568.0	1.42%
STAT6/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-4	-9.980e+00	0.0001	1642.0	4.08%	1483.0	3.71%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-4	-9.777e+00	0.0001	194.0	0.48%	144.7	0.36%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-4	-9.405e+00	0.0001	488.0	1.21%	407.8	1.02%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-3	-9.163e+00	0.0002	1286.0	3.19%	1152.3	2.88%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e-3	-9.098e+00	0.0002	10997.0	27.31%	10603.2	26.50%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-3	-8.916e+00	0.0002	641.0	1.59%	550.6	1.38%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-3	-8.486e+00	0.0003	1773.0	4.40%	1621.4	4.05%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-3	-8.354e+00	0.0004	3222.0	8.00%	3016.7	7.54%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e-3	-8.194e+00	0.0004	8417.0	20.90%	8087.2	20.21%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-3	-7.983e+00	0.0005	166.0	0.41%	125.9	0.31%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-3	-7.422e+00	0.0009	615.0	1.53%	535.9	1.34%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-3	-6.984e+00	0.0014	6765.0	16.80%	6493.4	16.23%
LXRE(NR/DR4)/BLRP(RAW)-LXRb-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-2	-6.578e+00	0.0020	186.0	0.46%	147.2	0.37%
c-Myc(HLH)/LNCAP-cMyc-ChIP-Seq(unpublished)/Homer	VCCACGTG	1e-2	-6.364e+00	0.0025	1869.0	4.64%	1737.2	4.34%
Max(HLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-2	-5.970e+00	0.0037	2097.0	5.21%	1962.2	4.90%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-2	-5.904e+00	0.0039	1279.0	3.18%	1176.2	2.94%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-2	-5.654e+00	0.0050	1547.0	3.84%	1436.3	3.59%
PAX5-shortForm(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-2	-5.563e+00	0.0055	411.0	1.02%	357.5	0.89%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-2	-5.488e+00	0.0058	607.0	1.51%	541.5	1.35%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-2	-4.900e+00	0.0105	1593.0	3.96%	1490.9	3.73%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-2	-4.783e+00	0.0117	6578.0	16.34%	6362.5	15.90%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-2	-4.746e+00	0.0121	1509.0	3.75%	1411.7	3.53%
Pax7-longest(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e-2	-4.715e+00	0.0124	37.0	0.09%	24.9	0.06%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e-1	-4.249e+00	0.0196	1568.0	3.89%	1475.4	3.69%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-1	-4.171e+00	0.0211	2298.0	5.71%	2185.2	5.46%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-1	-4.036e+00	0.0240	7565.0	18.79%	7355.3	18.38%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-1	-4.028e+00	0.0241	1099.0	2.73%	1025.8	2.56%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-1	-4.028e+00	0.0241	351.0	0.87%	311.5	0.78%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-1	-3.810e+00	0.0296	235.0	0.58%	204.8	0.51%
TRa(NR)/C17.2-TRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-1	-3.728e+00	0.0320	1600.0	3.97%	1514.6	3.78%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e-1	-3.527e+00	0.0389	2345.0	5.82%	2243.1	5.61%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-1	-3.523e+00	0.0389	1119.0	2.78%	1051.9	2.63%
ETS:E-box/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-1	-3.429e+00	0.0424	340.0	0.84%	305.5	0.76%
E2F(E2F)/Cell-Cycle-Exp/Homer	TTSGCGCGAAAA	1e-1	-3.329e+00	0.0466	266.0	0.66%	236.4	0.59%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e-1	-3.193e+00	0.0532	866.0	2.15%	811.2	2.03%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-1	-2.985e+00	0.0651	3936.0	9.77%	3815.9	9.54%
CEBP(bZIP)/CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-1	-2.788e+00	0.0789	1578.0	3.92%	1509.3	3.77%
n-Myc(HLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-1	-2.766e+00	0.0802	2316.0	5.75%	2231.7	5.58%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e-1	-2.750e+00	0.0810	2285.0	5.67%	2201.1	5.50%
bZIP:IRF/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-1	-2.594e+00	0.0942	1015.0	2.52%	964.1	2.41%
ETS:RUNX/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-1	-2.411e+00	0.1127	381.0	0.95%	353.2	0.88%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-2.202e+00	0.1381	284.0	0.71%	262.7	0.66%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-2.171e+00	0.1417	7153.0	17.76%	7017.2	17.53%
HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-2.136e+00	0.1460	771.0	1.91%	734.3	1.83%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-1.918e+00	0.1807	923.0	2.29%	886.6	2.22%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-1.801e+00	0.2022	344.0	0.85%	324.6	0.81%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-1.751e+00	0.2115	300.0	0.75%	282.5	0.71%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-1.658e+00	0.2310	1190.0	2.96%	1153.8	2.88%
NFAT:AP1/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-1.576e+00	0.2495	410.0	1.02%	391.4	0.98%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-1.568e+00	0.2503	1957.0	4.86%	1910.9	4.78%
RBPJ:Ebox/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-1.559e+00	0.2512	1210.0	3.01%	1175.7	2.94%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-1.407e+00	0.2911	1137.0	2.82%	1107.8	2.77%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e0	-1.247e+00	0.3398	227.0	0.56%	217.9	0.54%
NFkB-p50,p52(RHD)/p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e0	-1.191e+00	0.3579	408.0	1.01%	395.1	0.99%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529/Homer	CYAAAAATAG	1e0	-1.142e+00	0.3737	851.0	2.11%	832.1	2.08%
ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-1.022e+00	0.4196	8781.0	21.81%	8697.5	21.73%
FXR(NR/IR1)/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e0	-8.711e-01	0.4856	1461.0	3.63%	1444.5	3.61%
GLI3(Zf)/GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-7.673e-01	0.5362	452.0	1.12%	447.6	1.12%
ISRE(IRF)/ThioMac-LPS-exp(GSE23622)/HOMER	AGTTTCASTTTC	1e0	-6.796e-01	0.5826	141.0	0.35%	140.8	0.35%
Reverb(NR/DR2)/BLRP(RAW)-Reverba-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-5.493e-01	0.6606	446.0	1.11%	447.9	1.12%
c-Myc/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-5.112e-01	0.6831	1494.0	3.71%	1494.1	3.73%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-4.407e-01	0.7296	51.0	0.13%	54.0	0.13%
VDR(NR/DR3)/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-4.398e-01	0.7296	659.0	1.64%	664.2	1.66%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-4.154e-01	0.7414	1542.0	3.83%	1548.3	3.87%
T1ISRE(IRF)/Ifnb-Exp/Homer	ACTTTCGTTTCT	1e0	-3.663e-01	0.7753	23.0	0.06%	25.3	0.06%
CHR/Cell-Cycle-Exp/Homer	SRGTTTCAAA	1e0	-3.606e-01	0.7761	1482.0	3.68%	1492.5	3.73%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-3.376e-01	0.7906	5316.0	13.20%	5321.2	13.30%
Pax8(Paired/Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-3.310e-01	0.7922	1230.0	3.05%	1242.8	3.11%
HIF2a(HLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-2.741e-01	0.8350	1093.0	2.71%	1109.5	2.77%
NPAS2(HLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-2.738e-01	0.8350	3493.0	8.67%	3511.2	8.77%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-1.879e-01	0.9021	758.0	1.88%	779.2	1.95%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-1.871e-01	0.9021	82.0	0.20%	90.3	0.23%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-1.607e-01	0.9188	5987.0	14.87%	6024.4	15.05%
PAX5(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-1.546e-01	0.9203	1357.0	3.37%	1387.8	3.47%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-1.335e-01	0.9359	52.0	0.13%	60.8	0.15%
ERE(NR/IR3)/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-1.064e-01	0.9575	815.0	2.02%	846.6	2.12%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-8.373e-02	0.9752	3935.0	9.77%	3994.0	9.98%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-7.973e-02	0.9752	15005.0	37.26%	15050.9	37.61%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-3.494e-02	1.0000	236.0	0.59%	263.1	0.66%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-3.494e-02	1.0000	236.0	0.59%	263.1	0.66%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-1.261e-02	1.0000	719.0	1.79%	775.1	1.94%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-1.034e-02	1.0000	2101.0	5.22%	2192.3	5.48%
Mouse_Recombination_Hotspot/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-9.567e-03	1.0000	128.0	0.32%	155.4	0.39%
BMAL1(HLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-8.410e-03	1.0000	5352.0	13.29%	5482.4	13.70%
GRE/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-7.540e-04	1.0000	620.0	1.54%	697.6	1.74%
GRE(NR/IR3)/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-4.100e-05	1.0000	345.0	0.86%	420.3	1.05%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-2.200e-05	1.0000	416.0	1.03%	501.3	1.25%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-4.000e-06	1.0000	1698.0	4.22%	1873.8	4.68%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-0.000e+00	1.0000	2352.0	5.84%	2579.0	6.44%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-0.000e+00	1.0000	1072.0	2.66%	1333.7	3.33%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-0.000e+00	1.0000	467.0	1.16%	654.0	1.63%