Information for motif13


Reverse Opposite:

p-value:1e-115
log p-value:-2.669e+02
Information Content per bp:1.927
Number of Target Sequences with motif137.0
Percentage of Target Sequences with motif0.60%
Number of Background Sequences with motif5.2
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets111.0 +/- 53.3bp
Average Position of motif in Background141.1 +/- 42.6bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1(Zf)/Promoter/Homer

Match Rank:1
Score:0.92
Offset:-2
Orientation:forward strand
Alignment:--AGATGGCGGC
CAAGATGGCGGC

MA0095.2_YY1/Jaspar

Match Rank:2
Score:0.85
Offset:-2
Orientation:forward strand
Alignment:--AGATGGCGGC
CAAGATGGCGGC

MA0461.1_Atoh1/Jaspar

Match Rank:3
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-AGATGGCGGC
CAGATGGC---

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:4
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---AGATGGCGGC
AACAGATGGC---

PB0164.1_Smad3_2/Jaspar

Match Rank:5
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--AGATGGCGGC-----
NAGANTGGCGGGGNGNA

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:6
Score:0.64
Offset:-6
Orientation:forward strand
Alignment:------AGATGGCGGC-
AAGGCCAGATGGTCCGG

PB0112.1_E2F2_2/Jaspar

Match Rank:7
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--AGATGGCGGC-----
NNNNTTGGCGCCGANNN

Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer

Match Rank:8
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---AGATGGCGGC
AACAKATGGY---

Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer

Match Rank:9
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----AGATGGCGGC
VNAVCAGCTGGC---

PB0113.1_E2F3_2/Jaspar

Match Rank:10
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--AGATGGCGGC-----
NNNNTTGGCGCCGANNN