Information for motif20


Reverse Opposite:

p-value:1e-48
log p-value:-1.124e+02
Information Content per bp:1.952
Number of Target Sequences with motif78.0
Percentage of Target Sequences with motif0.34%
Number of Background Sequences with motif5.6
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets106.0 +/- 58.4bp
Average Position of motif in Background98.7 +/- 60.3bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:1
Score:0.77
Offset:0
Orientation:forward strand
Alignment:TCCGTGCG
TACGTGCV

HIF2a(HLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:2
Score:0.75
Offset:-3
Orientation:reverse strand
Alignment:---TCCGTGCG
GGGTACGTGC-

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer

Match Rank:3
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-TCCGTGCG-
TTGCGTGCVA

MA0259.1_HIF1A::ARNT/Jaspar

Match Rank:4
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-TCCGTGCG
GGACGTGC-

PB0044.1_Mtf1_1/Jaspar

Match Rank:5
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--TCCGTGCG------
GGGCCGTGTGCAAAAA

MA0006.1_Arnt::Ahr/Jaspar

Match Rank:6
Score:0.64
Offset:0
Orientation:forward strand
Alignment:TCCGTGCG
TGCGTG--

MA0131.1_HINFP/Jaspar

Match Rank:7
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-TCCGTGCG-
TAACGTCCGC

MA0004.1_Arnt/Jaspar

Match Rank:8
Score:0.58
Offset:0
Orientation:forward strand
Alignment:TCCGTGCG
CACGTG--

bHLHE40(HLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---TCCGTGCG
NGKCACGTGM-

PB0027.1_Gmeb1_1/Jaspar

Match Rank:10
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----TCCGTGCG----
GAGTGTACGTAAGATGG