Information for motif9


Reverse Opposite:

p-value:1e-149
log p-value:-3.440e+02
Information Content per bp:1.724
Number of Target Sequences with motif140.0
Percentage of Target Sequences with motif0.61%
Number of Background Sequences with motif3.6
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets100.1 +/- 55.2bp
Average Position of motif in Background91.0 +/- 50.8bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

USF1(HLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.80
Offset:0
Orientation:reverse strand
Alignment:YCGCGTGMCG
TCACGTGACC

PB0147.1_Max_2/Jaspar

Match Rank:2
Score:0.79
Offset:-3
Orientation:reverse strand
Alignment:---YCGCGTGMCG-
NNGTCGCGTGNCAC

Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer

Match Rank:3
Score:0.77
Offset:-1
Orientation:reverse strand
Alignment:-YCGCGTGMCG
ACCACGTGAC-

CLOCK(HLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer

Match Rank:4
Score:0.77
Offset:1
Orientation:reverse strand
Alignment:YCGCGTGMCG
-CACGTGDC-

BMAL1(HLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer

Match Rank:5
Score:0.77
Offset:1
Orientation:reverse strand
Alignment:YCGCGTGMCG
-CACGTGNC-

bHLHE40(HLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.77
Offset:0
Orientation:forward strand
Alignment:YCGCGTGMCG
KCACGTGMCN

c-Myc(HLH)/LNCAP-cMyc-ChIP-Seq(unpublished)/Homer

Match Rank:7
Score:0.76
Offset:-1
Orientation:forward strand
Alignment:-YCGCGTGMCG
NCCACGTG---

E-box(HLH)/Promoter/Homer

Match Rank:8
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:YCGCGTGMCG--
TCACGTGACCGG

NPAS2(HLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer

Match Rank:9
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-YCGCGTGMCG
KCCACGTGAC-

MA0004.1_Arnt/Jaspar

Match Rank:10
Score:0.74
Offset:1
Orientation:forward strand
Alignment:YCGCGTGMCG
-CACGTG---