Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 22871)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 14644)	% of Background Sequences with Motif
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-670	-1.545e+03	0.0000	4055.0	17.73%	995.8	6.80%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-623	-1.436e+03	0.0000	3417.0	14.94%	783.8	5.35%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-553	-1.273e+03	0.0000	1812.0	7.92%	275.1	1.88%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-546	-1.258e+03	0.0000	3073.0	13.44%	712.2	4.87%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-530	-1.221e+03	0.0000	2153.0	9.41%	393.0	2.68%
Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-411	-9.480e+02	0.0000	3641.0	15.92%	1078.6	7.37%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-302	-6.969e+02	0.0000	1830.0	8.00%	435.5	2.97%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-268	-6.186e+02	0.0000	1542.0	6.74%	355.0	2.43%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-248	-5.733e+02	0.0000	2582.0	11.29%	808.7	5.52%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-235	-5.420e+02	0.0000	5330.0	23.31%	2203.2	15.05%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e-214	-4.940e+02	0.0000	5189.0	22.69%	2176.4	14.87%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-183	-4.227e+02	0.0000	1860.0	8.13%	572.8	3.91%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-180	-4.166e+02	0.0000	4750.0	20.77%	2022.3	13.81%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-167	-3.851e+02	0.0000	2636.0	11.53%	960.2	6.56%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-166	-3.825e+02	0.0000	1756.0	7.68%	549.1	3.75%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-160	-3.703e+02	0.0000	1616.0	7.07%	494.3	3.38%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-159	-3.684e+02	0.0000	4079.0	17.84%	1715.5	11.72%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-157	-3.618e+02	0.0000	2366.0	10.35%	847.2	5.79%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-154	-3.559e+02	0.0000	572.0	2.50%	95.8	0.65%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-150	-3.466e+02	0.0000	1261.0	5.51%	354.6	2.42%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-145	-3.359e+02	0.0000	541.0	2.37%	90.1	0.62%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-137	-3.160e+02	0.0000	3184.0	13.92%	1299.8	8.88%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-131	-3.023e+02	0.0000	1991.0	8.71%	712.4	4.87%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-118	-2.724e+02	0.0000	1981.0	8.66%	731.7	5.00%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-116	-2.681e+02	0.0000	520.0	2.27%	100.4	0.69%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-111	-2.569e+02	0.0000	1883.0	8.23%	696.5	4.76%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-96	-2.226e+02	0.0000	2772.0	12.12%	1185.9	8.10%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-92	-2.119e+02	0.0000	817.0	3.57%	236.0	1.61%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-78	-1.804e+02	0.0000	3960.0	17.32%	1897.4	12.96%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-72	-1.671e+02	0.0000	61.0	0.27%	0.2	0.00%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-72	-1.668e+02	0.0000	3018.0	13.20%	1392.8	9.51%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-71	-1.650e+02	0.0000	2183.0	9.55%	942.9	6.44%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-68	-1.573e+02	0.0000	1080.0	4.72%	390.0	2.66%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-68	-1.571e+02	0.0000	2939.0	12.85%	1363.5	9.31%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-67	-1.565e+02	0.0000	5607.0	24.52%	2896.6	19.79%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-67	-1.565e+02	0.0000	1575.0	6.89%	635.4	4.34%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-66	-1.542e+02	0.0000	309.0	1.35%	61.9	0.42%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-65	-1.513e+02	0.0000	3397.0	14.85%	1628.9	11.13%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-64	-1.492e+02	0.0000	4338.0	18.97%	2169.9	14.82%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-63	-1.458e+02	0.0000	1163.0	5.09%	439.0	3.00%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-59	-1.362e+02	0.0000	2633.0	11.51%	1226.8	8.38%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-55	-1.288e+02	0.0000	695.0	3.04%	230.2	1.57%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-49	-1.133e+02	0.0000	725.0	3.17%	255.9	1.75%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-45	-1.052e+02	0.0000	8482.0	37.09%	4775.9	32.63%
SCL(HLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-44	-1.014e+02	0.0000	11784.0	51.53%	6866.4	46.91%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-43	-1.009e+02	0.0000	3821.0	16.71%	1970.9	13.46%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-43	-1.009e+02	0.0000	1884.0	8.24%	869.0	5.94%
CTCF-SatelliteElement/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-43	-9.992e+01	0.0000	93.0	0.41%	9.3	0.06%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-43	-9.931e+01	0.0000	2155.0	9.42%	1021.6	6.98%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-42	-9.866e+01	0.0000	4333.0	18.95%	2276.9	15.55%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-39	-9.201e+01	0.0000	1608.0	7.03%	732.2	5.00%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-39	-9.044e+01	0.0000	1411.0	6.17%	628.3	4.29%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-38	-8.834e+01	0.0000	1795.0	7.85%	840.0	5.74%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-36	-8.328e+01	0.0000	248.0	1.08%	63.1	0.43%
Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-35	-8.181e+01	0.0000	719.0	3.14%	279.6	1.91%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-34	-7.990e+01	0.0000	797.0	3.49%	320.4	2.19%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-34	-7.959e+01	0.0000	2177.0	9.52%	1069.8	7.31%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-34	-7.857e+01	0.0000	4295.0	18.78%	2306.9	15.76%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-32	-7.551e+01	0.0000	286.0	1.25%	82.2	0.56%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-31	-7.202e+01	0.0000	523.0	2.29%	192.6	1.32%
GFY-Staf/Promoters/Homer	RACTACAATTCCCAGAAKGC	1e-31	-7.155e+01	0.0000	170.0	0.74%	38.5	0.26%
Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-31	-7.139e+01	0.0000	2192.0	9.59%	1094.2	7.47%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-28	-6.629e+01	0.0000	4651.0	20.34%	2556.5	17.46%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-28	-6.467e+01	0.0000	688.0	3.01%	281.8	1.92%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-27	-6.371e+01	0.0000	3124.0	13.66%	1653.2	11.29%
Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-26	-6.138e+01	0.0000	710.0	3.10%	296.1	2.02%
Oct2(POU/Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-26	-6.131e+01	0.0000	448.0	1.96%	165.7	1.13%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-26	-6.093e+01	0.0000	1136.0	4.97%	523.2	3.57%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-25	-5.864e+01	0.0000	2011.0	8.79%	1018.5	6.96%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-25	-5.775e+01	0.0000	1527.0	6.68%	745.2	5.09%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-24	-5.688e+01	0.0000	4343.0	18.99%	2401.2	16.40%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-24	-5.621e+01	0.0000	3434.0	15.02%	1858.2	12.69%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-22	-5.222e+01	0.0000	8075.0	35.31%	4717.0	32.22%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-22	-5.085e+01	0.0000	7745.0	33.87%	4517.6	30.86%
NRF1/Promoter/Homer	STGCGCATGCGC	1e-21	-5.061e+01	0.0000	633.0	2.77%	269.2	1.84%
BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer	NHAACBGYYV	1e-21	-5.029e+01	0.0000	3197.0	13.98%	1735.4	11.86%
NFkB-p65-Rel(RHD)/LPS-exp(GSE23622)/Homer	GGAAATTCCC	1e-21	-4.993e+01	0.0000	138.0	0.60%	34.2	0.23%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-20	-4.754e+01	0.0000	1124.0	4.91%	539.2	3.68%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-20	-4.661e+01	0.0000	1280.0	5.60%	628.5	4.29%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-20	-4.623e+01	0.0000	3818.0	16.70%	2121.9	14.50%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-18	-4.366e+01	0.0000	189.0	0.83%	58.2	0.40%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-18	-4.200e+01	0.0000	1057.0	4.62%	512.8	3.50%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-18	-4.158e+01	0.0000	346.0	1.51%	133.5	0.91%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-17	-4.141e+01	0.0000	674.0	2.95%	303.2	2.07%
Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-17	-4.063e+01	0.0000	272.0	1.19%	98.6	0.67%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-17	-4.004e+01	0.0000	3398.0	14.86%	1890.2	12.91%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-17	-3.950e+01	0.0000	441.0	1.93%	183.8	1.26%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-17	-3.939e+01	0.0000	114.0	0.50%	30.0	0.20%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-16	-3.849e+01	0.0000	747.0	3.27%	347.3	2.37%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-16	-3.768e+01	0.0000	433.0	1.89%	181.5	1.24%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-15	-3.664e+01	0.0000	605.0	2.65%	273.3	1.87%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-15	-3.584e+01	0.0000	2819.0	12.33%	1557.7	10.64%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-14	-3.283e+01	0.0000	5535.0	24.20%	3229.3	22.06%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-14	-3.281e+01	0.0000	7053.0	30.84%	4174.5	28.52%
Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-13	-3.203e+01	0.0000	3028.0	13.24%	1697.9	11.60%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-13	-3.157e+01	0.0000	2148.0	9.39%	1172.0	8.01%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-13	-3.114e+01	0.0000	892.0	3.90%	441.2	3.01%
GATA-IR3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-12	-2.937e+01	0.0000	225.0	0.98%	85.3	0.58%
GATA:SCL/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-12	-2.868e+01	0.0000	280.0	1.22%	113.2	0.77%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-12	-2.849e+01	0.0000	2821.0	12.34%	1586.6	10.84%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e-12	-2.841e+01	0.0000	754.0	3.30%	369.9	2.53%
GATA-IR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-12	-2.801e+01	0.0000	140.0	0.61%	46.9	0.32%
NF1:FOXA1/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-12	-2.773e+01	0.0000	144.0	0.63%	48.2	0.33%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-11	-2.712e+01	0.0000	1221.0	5.34%	639.3	4.37%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-11	-2.693e+01	0.0000	202.0	0.88%	76.4	0.52%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-11	-2.663e+01	0.0000	760.0	3.32%	376.9	2.57%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-10	-2.500e+01	0.0000	1754.0	7.67%	959.1	6.55%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-10	-2.441e+01	0.0000	559.0	2.44%	268.9	1.84%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-10	-2.367e+01	0.0000	524.0	2.29%	250.5	1.71%
E-box(HLH)/Promoter/Homer	SSGGTCACGTGA	1e-10	-2.366e+01	0.0000	267.0	1.17%	112.5	0.77%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-10	-2.360e+01	0.0000	362.0	1.58%	162.2	1.11%
E2A(HLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-9	-2.260e+01	0.0000	4191.0	18.33%	2452.7	16.75%
FXR(NR/IR1)/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e-9	-2.246e+01	0.0000	894.0	3.91%	462.2	3.16%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-9	-2.233e+01	0.0000	1540.0	6.73%	841.3	5.75%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-9	-2.153e+01	0.0000	1151.0	5.03%	614.4	4.20%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-9	-2.147e+01	0.0000	1471.0	6.43%	803.0	5.49%
Ptf1a(HLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-9	-2.133e+01	0.0000	6945.0	30.37%	4177.7	28.54%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-9	-2.125e+01	0.0000	614.0	2.68%	305.6	2.09%
FOXA1:AR/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-9	-2.075e+01	0.0000	118.0	0.52%	41.7	0.28%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-8	-2.010e+01	0.0000	629.0	2.75%	316.2	2.16%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-8	-1.982e+01	0.0000	4731.0	20.69%	2803.2	19.15%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-8	-1.973e+01	0.0000	1501.0	6.56%	827.8	5.66%
Egr2/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-8	-1.948e+01	0.0000	586.0	2.56%	293.7	2.01%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-8	-1.936e+01	0.0000	383.0	1.67%	180.9	1.24%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-8	-1.933e+01	0.0000	1068.0	4.67%	572.8	3.91%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-8	-1.892e+01	0.0000	140.0	0.61%	53.4	0.37%
HNF4a(NR/DR1)/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-8	-1.874e+01	0.0000	1053.0	4.60%	565.7	3.86%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-8	-1.868e+01	0.0000	2195.0	9.60%	1249.9	8.54%
PRDM1/BMI1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-7	-1.764e+01	0.0000	904.0	3.95%	481.8	3.29%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-7	-1.715e+01	0.0000	1063.0	4.65%	576.5	3.94%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-6	-1.569e+01	0.0000	1981.0	8.66%	1133.5	7.74%
PPARE(NR/DR1)/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-6	-1.547e+01	0.0000	2214.0	9.68%	1276.0	8.72%
USF1(HLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-6	-1.537e+01	0.0000	1041.0	4.55%	569.3	3.89%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-6	-1.527e+01	0.0000	357.0	1.56%	173.7	1.19%
MyoG(HLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-6	-1.433e+01	0.0000	3008.0	13.15%	1770.6	12.10%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e-6	-1.428e+01	0.0000	1470.0	6.43%	830.4	5.67%
Ap4(HLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-6	-1.404e+01	0.0000	3356.0	14.67%	1987.9	13.58%
ETS:RUNX/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-6	-1.399e+01	0.0000	231.0	1.01%	106.4	0.73%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-6	-1.397e+01	0.0000	264.0	1.15%	124.5	0.85%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-5	-1.347e+01	0.0000	1583.0	6.92%	902.8	6.17%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-5	-1.316e+01	0.0000	276.0	1.21%	132.9	0.91%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e-5	-1.286e+01	0.0000	151.0	0.66%	65.9	0.45%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e-5	-1.286e+01	0.0000	151.0	0.66%	65.9	0.45%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e-5	-1.254e+01	0.0000	1419.0	6.20%	807.1	5.51%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-5	-1.252e+01	0.0000	659.0	2.88%	353.6	2.42%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-5	-1.244e+01	0.0000	1168.0	5.11%	656.1	4.48%
GATA-DR8(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-5	-1.233e+01	0.0000	95.0	0.42%	37.7	0.26%
MyoD(HLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-5	-1.231e+01	0.0000	2360.0	10.32%	1384.0	9.45%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-5	-1.207e+01	0.0000	1800.0	7.87%	1041.4	7.11%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-5	-1.191e+01	0.0000	512.0	2.24%	269.0	1.84%
Srebp2(HLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-4	-1.098e+01	0.0000	297.0	1.30%	149.0	1.02%
LXRE(NR/DR4)/BLRP(RAW)-LXRb-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-4	-1.077e+01	0.0000	123.0	0.54%	53.5	0.37%
RXR(NR/DR1)/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-4	-1.058e+01	0.0000	2716.0	11.88%	1614.0	11.03%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-4	-1.030e+01	0.0001	83.0	0.36%	33.4	0.23%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-4	-9.794e+00	0.0001	2594.0	11.34%	1544.3	10.55%
ETS:E-box/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-4	-9.775e+00	0.0001	198.0	0.87%	95.6	0.65%
bHLHE40(HLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-4	-9.375e+00	0.0001	690.0	3.02%	382.9	2.62%
NPAS2(HLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-3	-9.034e+00	0.0002	2078.0	9.09%	1230.2	8.40%
CLOCK(HLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-3	-8.366e+00	0.0004	1130.0	4.94%	652.8	4.46%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-3	-8.356e+00	0.0004	248.0	1.08%	126.2	0.86%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-3	-8.099e+00	0.0005	5185.0	22.67%	3181.7	21.74%
GATA-DR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-3	-7.686e+00	0.0007	115.0	0.50%	53.5	0.37%
OCT4-SOX2-TCF-NANOG((POU/Homeobox/HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-3	-7.110e+00	0.0012	178.0	0.78%	89.1	0.61%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-3	-6.940e+00	0.0015	582.0	2.54%	327.5	2.24%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-2	-6.427e+00	0.0024	93.0	0.41%	43.7	0.30%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e-2	-6.419e+00	0.0024	638.0	2.79%	363.8	2.49%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-2	-6.407e+00	0.0024	704.0	3.08%	403.8	2.76%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-2	-6.305e+00	0.0027	969.0	4.24%	565.0	3.86%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-2	-5.978e+00	0.0037	99.0	0.43%	47.5	0.32%
TR4(NR/DR1)/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-2	-5.774e+00	0.0045	303.0	1.32%	165.8	1.13%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-2	-5.706e+00	0.0048	849.0	3.71%	495.4	3.38%
bZIP:IRF/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-2	-4.964e+00	0.0100	549.0	2.40%	316.5	2.16%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e-2	-4.960e+00	0.0100	6162.0	26.94%	3839.0	26.23%
Max(HLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-2	-4.831e+00	0.0113	1242.0	5.43%	743.6	5.08%
STAT6/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-2	-4.799e+00	0.0116	897.0	3.92%	530.9	3.63%
BMAL1(HLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-1	-4.486e+00	0.0158	3206.0	14.02%	1976.9	13.50%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-1	-4.389e+00	0.0173	1275.0	5.58%	767.3	5.24%
Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-1	-4.364e+00	0.0176	419.0	1.83%	240.2	1.64%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-1	-4.179e+00	0.0211	3030.0	13.25%	1869.2	12.77%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-1	-4.089e+00	0.0229	792.0	3.46%	470.2	3.21%
CEBP(bZIP)/CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-1	-4.081e+00	0.0230	868.0	3.80%	517.5	3.54%
PAX5(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-1	-3.991e+00	0.0250	833.0	3.64%	496.7	3.39%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e-1	-3.966e+00	0.0255	470.0	2.06%	273.4	1.87%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529/Homer	CYAAAAATAG	1e-1	-3.956e+00	0.0256	465.0	2.03%	270.7	1.85%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-1	-3.780e+00	0.0304	365.0	1.60%	211.0	1.44%
E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e-1	-3.725e+00	0.0319	3638.0	15.91%	2259.9	15.44%
Srebp1a(HLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-1	-3.553e+00	0.0377	396.0	1.73%	230.1	1.57%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-1	-3.345e+00	0.0462	4011.0	17.54%	2501.9	17.09%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-1	-3.134e+00	0.0567	3535.0	15.46%	2203.7	15.05%
ISRE(IRF)/ThioMac-LPS-exp(GSE23622)/HOMER	AGTTTCASTTTC	1e-1	-2.869e+00	0.0735	86.0	0.38%	46.4	0.32%
ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e-1	-2.783e+00	0.0797	5167.0	22.59%	3245.2	22.17%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-1	-2.487e+00	0.1065	1993.0	8.71%	1238.0	8.46%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-1	-2.447e+00	0.1103	159.0	0.70%	91.7	0.63%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e-1	-2.407e+00	0.1142	809.0	3.54%	494.9	3.38%
VDR(NR/DR3)/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e-1	-2.392e+00	0.1154	385.0	1.68%	230.5	1.57%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-1	-2.340e+00	0.1209	3875.0	16.94%	2433.8	16.63%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-1.936e+00	0.1802	330.0	1.44%	199.3	1.36%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e0	-1.774e+00	0.2109	110.0	0.48%	64.6	0.44%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-1.732e+00	0.2187	4361.0	19.07%	2756.6	18.83%
Pax7-long(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-1.705e+00	0.2236	30.0	0.13%	16.9	0.12%
GLI3(Zf)/GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-1.625e+00	0.2409	251.0	1.10%	152.0	1.04%
HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-1.480e+00	0.2772	501.0	2.19%	310.7	2.12%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-1.398e+00	0.2994	186.0	0.81%	114.0	0.78%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-1.148e+00	0.3827	145.0	0.63%	89.1	0.61%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-1.069e+00	0.4120	402.0	1.76%	252.5	1.73%
HIF2a(HLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-1.051e+00	0.4176	671.0	2.93%	423.2	2.89%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-1.024e+00	0.4269	32.0	0.14%	19.1	0.13%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-1.002e+00	0.4342	1276.0	5.58%	809.1	5.53%
Pax7(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-9.757e-01	0.4436	86.0	0.38%	53.0	0.36%
T1ISRE(IRF)/Ifnb-Exp/Homer	ACTTTCGTTTCT	1e0	-8.355e-01	0.5080	7.0	0.03%	4.5	0.03%
NFkB-p50,p52(RHD)/p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e0	-7.473e-01	0.5522	267.0	1.17%	170.6	1.17%
c-Myc(HLH)/LNCAP-cMyc-ChIP-Seq(unpublished)/Homer	VCCACGTG	1e0	-7.111e-01	0.5698	1115.0	4.88%	713.0	4.87%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-6.810e-01	0.5845	653.0	2.86%	418.2	2.86%
c-Myc/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-5.747e-01	0.6470	880.0	3.85%	566.3	3.87%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-5.587e-01	0.6544	884.0	3.87%	569.8	3.89%
Pax8(Paired/Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-5.374e-01	0.6654	785.0	3.43%	506.7	3.46%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-4.804e-01	0.7012	36.0	0.16%	24.4	0.17%
ERE(NR/IR3)/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-4.481e-01	0.7209	525.0	2.30%	341.2	2.33%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-4.157e-01	0.7413	52.0	0.23%	35.1	0.24%
Mouse_Recombination_Hotspot/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-3.741e-01	0.7692	59.0	0.26%	40.4	0.28%
GRE/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-3.427e-01	0.7902	394.0	1.72%	259.5	1.77%
CHR/Cell-Cycle-Exp/Homer	SRGTTTCAAA	1e0	-3.252e-01	0.8005	787.0	3.44%	514.2	3.51%
NFAT:AP1/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-3.223e-01	0.8005	218.0	0.95%	145.2	0.99%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-2.809e-01	0.8293	4667.0	20.41%	3014.8	20.60%
RBPJ:Ebox/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-1.972e-01	0.8977	741.0	3.24%	490.6	3.35%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-1.749e-01	0.9138	1059.0	4.63%	698.7	4.77%
PAX3:FKHR-fusion(Paired/Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-1.724e-01	0.9138	262.0	1.15%	178.2	1.22%
Pax7-longest(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-1.587e-01	0.9206	12.0	0.05%	10.2	0.07%
TRa(NR)/C17.2-TRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-1.559e-01	0.9206	923.0	4.04%	611.0	4.17%
GRE(NR/IR3)/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-6.789e-02	0.9994	221.0	0.97%	156.7	1.07%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-5.169e-02	1.0000	481.0	2.10%	331.4	2.26%
n-Myc(HLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-3.787e-02	1.0000	1365.0	5.97%	915.3	6.25%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-1.584e-02	1.0000	4218.0	18.44%	2781.6	19.00%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-8.396e-03	1.0000	1072.0	4.69%	736.4	5.03%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e0	-4.555e-03	1.0000	1293.0	5.65%	887.9	6.07%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-3.142e-03	1.0000	8681.0	37.96%	5685.5	38.84%
PAX5-shortForm(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-1.907e-03	1.0000	229.0	1.00%	176.8	1.21%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-4.330e-04	1.0000	242.0	1.06%	190.1	1.30%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-1.230e-04	1.0000	620.0	2.71%	457.9	3.13%
Reverb(NR/DR2)/BLRP(RAW)-Reverba-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-5.300e-05	1.0000	257.0	1.12%	208.0	1.42%
E2F(E2F)/Cell-Cycle-Exp/Homer	TTSGCGCGAAAA	1e0	-2.800e-05	1.0000	145.0	0.63%	128.0	0.87%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-0.000e+00	1.0000	1330.0	5.82%	977.7	6.68%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-0.000e+00	1.0000	961.0	4.20%	725.1	4.95%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-0.000e+00	1.0000	3118.0	13.63%	2179.3	14.89%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-0.000e+00	1.0000	269.0	1.18%	238.3	1.63%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-0.000e+00	1.0000	2337.0	10.22%	1670.0	11.41%