Information for motif17


Reverse Opposite:

p-value:1e-24
log p-value:-5.579e+01
Information Content per bp:1.713
Number of Target Sequences with motif110.0
Percentage of Target Sequences with motif0.48%
Number of Background Sequences with motif40.8
Percentage of Background Sequences with motif0.15%
Average Position of motif in Targets93.2 +/- 52.5bp
Average Position of motif in Background99.9 +/- 59.3bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0087.1_Sox5/Jaspar

Match Rank:1
Score:0.74
Offset:5
Orientation:reverse strand
Alignment:CCGTGAAACAAT
-----NAACAAT

MA0084.1_SRY/Jaspar

Match Rank:2
Score:0.72
Offset:3
Orientation:forward strand
Alignment:CCGTGAAACAAT
---GTAAACAAT

MF0011.1_HMG_class/Jaspar

Match Rank:3
Score:0.71
Offset:6
Orientation:reverse strand
Alignment:CCGTGAAACAAT
------AACAAT

PB0183.1_Sry_2/Jaspar

Match Rank:4
Score:0.70
Offset:0
Orientation:forward strand
Alignment:CCGTGAAACAAT-----
TCACGGAACAATAGGTG

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.69
Offset:1
Orientation:forward strand
Alignment:CCGTGAAACAAT
-ACTGAAACCA-

PB0070.1_Sox30_1/Jaspar

Match Rank:6
Score:0.68
Offset:2
Orientation:forward strand
Alignment:CCGTGAAACAAT------
--AATGAACAATGGAATT

MA0077.1_SOX9/Jaspar

Match Rank:7
Score:0.68
Offset:5
Orientation:reverse strand
Alignment:CCGTGAAACAAT--
-----GAACAATGG

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:8
Score:0.68
Offset:4
Orientation:reverse strand
Alignment:CCGTGAAACAAT--
----RNAACAATGG

PB0173.1_Sox21_2/Jaspar

Match Rank:9
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:CCGTGAAACAAT-----
NNNNNGAACAATTGANN

PB0073.1_Sox7_1/Jaspar

Match Rank:10
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-CCGTGAAACAAT---------
AATAAAGAACAATAGAATTTCA