Information for motif2


Reverse Opposite:

p-value:1e-615
log p-value:-1.418e+03
Information Content per bp:1.733
Number of Target Sequences with motif1396.0
Percentage of Target Sequences with motif6.08%
Number of Background Sequences with motif262.5
Percentage of Background Sequences with motif0.98%
Average Position of motif in Targets98.1 +/- 47.7bp
Average Position of motif in Background98.5 +/- 54.3bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.93
Offset:-7
Orientation:forward strand
Alignment:-------GCCCCCTRGTGG-
CNNBRGCGCCCCCTGSTGGC

MA0139.1_CTCF/Jaspar

Match Rank:2
Score:0.92
Offset:-4
Orientation:reverse strand
Alignment:----GCCCCCTRGTGG---
TAGCGCCCCCTGGTGGCCA

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer

Match Rank:3
Score:0.91
Offset:-5
Orientation:forward strand
Alignment:-----GCCCCCTRGTGG---
ANAGTGCCACCTGGTGGCCA

Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:GCCCCCTRGTGG-
-CCCCCTGCTGTG

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:5
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GCCCCCTRGTGG
GCCATCTGTT--

MA0461.1_Atoh1/Jaspar

Match Rank:6
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GCCCCCTRGTGG
GCCATCTG----

PB0076.1_Sp4_1/Jaspar

Match Rank:7
Score:0.62
Offset:-6
Orientation:forward strand
Alignment:------GCCCCCTRGTGG
GGTCCCGCCCCCTTCTC-

PB0101.1_Zic1_1/Jaspar

Match Rank:8
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GCCCCCTRGTGG--
CCCCCCCGGGGGNN

PB0103.1_Zic3_1/Jaspar

Match Rank:9
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GCCCCCTRGTGG--
CCCCCCCGGGGGGGT

PB0102.1_Zic2_1/Jaspar

Match Rank:10
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GCCCCCTRGTGG--
CCCCCCCGGGGGGGT