Information for motif20


Reverse Opposite:

p-value:1e-21
log p-value:-4.891e+01
Information Content per bp:1.973
Number of Target Sequences with motif30.0
Percentage of Target Sequences with motif0.13%
Number of Background Sequences with motif3.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets89.3 +/- 48.3bp
Average Position of motif in Background111.7 +/- 39.9bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0507.1_POU2F2/Jaspar

Match Rank:1
Score:0.64
Offset:1
Orientation:forward strand
Alignment:AAGCATTTGC----
-TTCATTTGCATAT

Oct2(POU/Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:2
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:AAGCATTTGC----
----ATTTGCATAT

Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.62
Offset:4
Orientation:forward strand
Alignment:AAGCATTTGC----
----ATTTGCATAA

MA0164.1_Nr2e3/Jaspar

Match Rank:4
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-AAGCATTTGC
CAAGCTT----

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:5
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:AAGCATTTGC-
AAGGATATNTN

ETS:E-box/HPC7-Scl-ChIP-Seq(GSE22178)/Homer

Match Rank:6
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---AAGCATTTGC
AGGAAACAGCTG-

PH0145.1_Pou2f3/Jaspar

Match Rank:7
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:AAGCATTTGC------
TNTAATTTGCATACNA

MA0058.2_MAX/Jaspar

Match Rank:8
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:AAGCATTTGC--
--CCATGTGCTT

EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer

Match Rank:9
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--AAGCATTTGC--------
GGYAGCAYDTGCTDCCCNNN

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:10
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---AAGCATTTGC----
CCNNACCATCTGGCCTN