Information for motif23


Reverse Opposite:

p-value:1e-10
log p-value:-2.392e+01
Information Content per bp:1.865
Number of Target Sequences with motif34.0
Percentage of Target Sequences with motif0.15%
Number of Background Sequences with motif10.2
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets96.2 +/- 52.1bp
Average Position of motif in Background102.6 +/- 63.0bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0121.1_Obox1/Jaspar

Match Rank:1
Score:0.79
Offset:-3
Orientation:forward strand
Alignment:---ASGKGATTAA----
TTAAGGGGATTAACTAC

PH0130.1_Otx2/Jaspar

Match Rank:2
Score:0.77
Offset:-2
Orientation:forward strand
Alignment:--ASGKGATTAA-----
TGTAGGGATTAATTGTC

PH0124.1_Obox5_1/Jaspar

Match Rank:3
Score:0.77
Offset:-2
Orientation:forward strand
Alignment:--ASGKGATTAA-----
TAGAGGGATTAAATTTC

PH0138.1_Pitx2/Jaspar

Match Rank:4
Score:0.77
Offset:-2
Orientation:forward strand
Alignment:--ASGKGATTAA-----
TGAAGGGATTAATCATC

PH0129.1_Otx1/Jaspar

Match Rank:5
Score:0.77
Offset:-2
Orientation:forward strand
Alignment:--ASGKGATTAA-----
AGAGGGGATTAATTTAT

PH0137.1_Pitx1/Jaspar

Match Rank:6
Score:0.76
Offset:-3
Orientation:forward strand
Alignment:---ASGKGATTAA----
TTAGAGGGATTAACAAT

MA0467.1_Crx/Jaspar

Match Rank:7
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-ASGKGATTAA
AAGAGGATTAG

PH0123.1_Obox3/Jaspar

Match Rank:8
Score:0.74
Offset:-3
Orientation:forward strand
Alignment:---ASGKGATTAA----
TGAGGGGGATTAACTAT

PH0122.1_Obox2/Jaspar

Match Rank:9
Score:0.73
Offset:-3
Orientation:forward strand
Alignment:---ASGKGATTAA----
TGAGGGGGATTAACTAT

PH0125.1_Obox5_2/Jaspar

Match Rank:10
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--ASGKGATTAA-----
NANAGGGATTAATTATN