Information for motif4


Reverse Opposite:

p-value:1e-177
log p-value:-4.093e+02
Information Content per bp:1.673
Number of Target Sequences with motif4643.0
Percentage of Target Sequences with motif20.22%
Number of Background Sequences with motif3606.2
Percentage of Background Sequences with motif13.42%
Average Position of motif in Targets100.0 +/- 54.5bp
Average Position of motif in Background97.5 +/- 60.8bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.16
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0502.1_NFYB/Jaspar

Match Rank:1
Score:0.81
Offset:-6
Orientation:forward strand
Alignment:------GCTAATCA-
AAATGGACCAATCAG

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:2
Score:0.79
Offset:0
Orientation:reverse strand
Alignment:GCTAATCA
NCTAATTA

NFY(CCAAT)/Promoter/Homer

Match Rank:3
Score:0.79
Offset:-1
Orientation:forward strand
Alignment:-GCTAATCA-
AGCCAATCGG

PH0097.1_Lhx6_2/Jaspar

Match Rank:4
Score:0.79
Offset:-4
Orientation:reverse strand
Alignment:----GCTAATCA-----
NNNCGCTAATTAGNNGA

POL004.1_CCAAT-box/Jaspar

Match Rank:5
Score:0.78
Offset:-4
Orientation:forward strand
Alignment:----GCTAATCA
ACTAGCCAATCA

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:6
Score:0.78
Offset:0
Orientation:forward strand
Alignment:GCTAATCA
GCTAATCC

PH0098.1_Lhx8/Jaspar

Match Rank:7
Score:0.77
Offset:-4
Orientation:reverse strand
Alignment:----GCTAATCA-----
CACCGCTAATTAGNNGN

MA0132.1_Pdx1/Jaspar

Match Rank:8
Score:0.76
Offset:1
Orientation:forward strand
Alignment:GCTAATCA
-CTAATT-

PH0155.1_Prrx2/Jaspar

Match Rank:9
Score:0.76
Offset:-4
Orientation:reverse strand
Alignment:----GCTAATCA-----
NTTCGCTAATTAGCTNT

Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer

Match Rank:10
Score:0.76
Offset:1
Orientation:reverse strand
Alignment:GCTAATCA---
-YTAATTAVHT