Information for motif7


Reverse Opposite:

p-value:1e-138
log p-value:-3.189e+02
Information Content per bp:1.589
Number of Target Sequences with motif2207.0
Percentage of Target Sequences with motif9.61%
Number of Background Sequences with motif1469.2
Percentage of Background Sequences with motif5.47%
Average Position of motif in Targets99.5 +/- 53.7bp
Average Position of motif in Background102.3 +/- 57.7bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0143.3_Sox2/Jaspar

Match Rank:1
Score:0.94
Offset:2
Orientation:forward strand
Alignment:BBCCTTTGTTYB
--CCTTTGTT--

MA0514.1_Sox3/Jaspar

Match Rank:2
Score:0.93
Offset:2
Orientation:forward strand
Alignment:BBCCTTTGTTYB
--CCTTTGTTTT

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.92
Offset:1
Orientation:forward strand
Alignment:BBCCTTTGTTYB
-NCCATTGTTC-

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:4
Score:0.92
Offset:2
Orientation:forward strand
Alignment:BBCCTTTGTTYB
--CCWTTGTY--

PB0061.1_Sox11_1/Jaspar

Match Rank:5
Score:0.92
Offset:-2
Orientation:reverse strand
Alignment:--BBCCTTTGTTYB---
NNNTCCTTTGTTCTNNN

PB0071.1_Sox4_1/Jaspar

Match Rank:6
Score:0.91
Offset:-2
Orientation:reverse strand
Alignment:--BBCCTTTGTTYB---
TNNTCCTTTGTTCTNNT

MA0515.1_Sox6/Jaspar

Match Rank:7
Score:0.91
Offset:2
Orientation:forward strand
Alignment:BBCCTTTGTTYB
--CCATTGTTTT

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:8
Score:0.86
Offset:2
Orientation:forward strand
Alignment:BBCCTTTGTTYB
--CCATTGTTNY

MA0442.1_SOX10/Jaspar

Match Rank:9
Score:0.84
Offset:3
Orientation:forward strand
Alignment:BBCCTTTGTTYB
---CTTTGT---

MA0077.1_SOX9/Jaspar

Match Rank:10
Score:0.83
Offset:2
Orientation:forward strand
Alignment:BBCCTTTGTTYB
--CCATTGTTC-