Information for motif9


Reverse Opposite:

p-value:1e-78
log p-value:-1.808e+02
Information Content per bp:1.449
Number of Target Sequences with motif277.0
Percentage of Target Sequences with motif1.21%
Number of Background Sequences with motif82.0
Percentage of Background Sequences with motif0.31%
Average Position of motif in Targets103.9 +/- 52.5bp
Average Position of motif in Background99.8 +/- 59.4bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1(Zf)/Promoter/Homer

Match Rank:1
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-TWGRYGGMGS-
CAAGATGGCGGC

PB0117.1_Eomes_2/Jaspar

Match Rank:2
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---TWGRYGGMGS---
GCGGAGGTGTCGCCTC

PB0179.1_Sp100_2/Jaspar

Match Rank:3
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----TWGRYGGMGS-
NNTTTANNCGACGNA

MA0095.2_YY1/Jaspar

Match Rank:4
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-TWGRYGGMGS-
CAAGATGGCGGC

MA0139.1_CTCF/Jaspar

Match Rank:5
Score:0.55
Offset:-7
Orientation:forward strand
Alignment:-------TWGRYGGMGS--
TGGCCACCAGGGGGCGCTA

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:6
Score:0.55
Offset:1
Orientation:forward strand
Alignment:TWGRYGGMGS
-AGGTGTCA-

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer

Match Rank:7
Score:0.54
Offset:-7
Orientation:reverse strand
Alignment:-------TWGRYGGMGS---
TGGCCACCAGGTGGCACTNT

PB0164.1_Smad3_2/Jaspar

Match Rank:8
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-TWGRYGGMGS------
NAGANTGGCGGGGNGNA

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.54
Offset:-5
Orientation:reverse strand
Alignment:-----TWGRYGGMGS-----
GCCASCAGGGGGCGCYVNNG

PB0128.1_Gcm1_2/Jaspar

Match Rank:10
Score:0.53
Offset:-6
Orientation:forward strand
Alignment:------TWGRYGGMGS-
TGCGCATAGGGGAGGAG