Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 22958)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 26872)	% of Background Sequences with Motif
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-775	-1.785e+03	0.0000	1816.0	7.91%	357.4	1.33%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-716	-1.651e+03	0.0000	4056.0	17.66%	1750.9	6.51%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-671	-1.545e+03	0.0000	3418.0	14.88%	1367.7	5.09%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-595	-1.372e+03	0.0000	3074.0	13.39%	1233.8	4.59%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-592	-1.365e+03	0.0000	2162.0	9.41%	662.6	2.46%
Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-436	-1.005e+03	0.0000	3641.0	15.85%	1919.2	7.14%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-278	-6.413e+02	0.0000	1542.0	6.71%	633.4	2.36%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-182	-4.199e+02	0.0000	4753.0	20.70%	3694.0	13.74%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-181	-4.178e+02	0.0000	2582.0	11.24%	1663.0	6.19%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e-180	-4.145e+02	0.0000	5190.0	22.60%	4138.8	15.40%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-173	-3.987e+02	0.0000	4081.0	17.77%	3079.1	11.46%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-172	-3.972e+02	0.0000	1860.0	8.10%	1073.9	4.00%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-163	-3.762e+02	0.0000	2637.0	11.48%	1769.6	6.58%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-133	-3.083e+02	0.0000	1616.0	7.04%	972.5	3.62%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-130	-3.015e+02	0.0000	1756.0	7.65%	1100.0	4.09%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-129	-2.993e+02	0.0000	2366.0	10.30%	1642.6	6.11%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-113	-2.603e+02	0.0000	3184.0	13.86%	2486.7	9.25%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-93	-2.164e+02	0.0000	5372.0	23.39%	4833.3	17.98%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-90	-2.081e+02	0.0000	541.0	2.36%	231.5	0.86%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-83	-1.934e+02	0.0000	572.0	2.49%	263.7	0.98%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-80	-1.858e+02	0.0000	3018.0	13.14%	2495.0	9.28%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-76	-1.760e+02	0.0000	520.0	2.26%	239.2	0.89%
Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-70	-1.620e+02	0.0000	2196.0	9.56%	1742.1	6.48%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-67	-1.558e+02	0.0000	817.0	3.56%	489.3	1.82%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-67	-1.552e+02	0.0000	2187.0	9.52%	1749.6	6.51%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-67	-1.549e+02	0.0000	1849.0	8.05%	1423.3	5.30%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-64	-1.493e+02	0.0000	1163.0	5.06%	797.9	2.97%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-56	-1.299e+02	0.0000	4339.0	18.89%	4038.8	15.03%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-55	-1.280e+02	0.0000	5651.0	24.61%	5461.3	20.32%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-51	-1.195e+02	0.0000	1884.0	8.20%	1539.0	5.73%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-50	-1.174e+02	0.0000	1080.0	4.70%	776.4	2.89%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-49	-1.133e+02	0.0000	1581.0	6.88%	1258.2	4.68%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-42	-9.893e+01	0.0000	695.0	3.03%	461.9	1.72%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-40	-9.250e+01	0.0000	4652.0	20.26%	4536.2	16.88%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-37	-8.686e+01	0.0000	8485.0	36.95%	8844.2	32.90%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-35	-8.198e+01	0.0000	3408.0	14.84%	3242.1	12.06%
Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-34	-8.021e+01	0.0000	719.0	3.13%	513.9	1.91%
SCL(HLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-34	-7.896e+01	0.0000	11805.0	51.40%	12727.6	47.35%
CTCF-SatelliteElement/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-33	-7.758e+01	0.0000	93.0	0.40%	23.0	0.09%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-31	-7.290e+01	0.0000	3974.0	17.30%	3896.1	14.49%
Oct2(POU/Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-31	-7.203e+01	0.0000	448.0	1.95%	286.3	1.06%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-31	-7.194e+01	0.0000	2783.0	12.12%	2620.9	9.75%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-30	-6.992e+01	0.0000	1268.0	5.52%	1062.7	3.95%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-30	-6.923e+01	0.0000	114.0	0.50%	36.0	0.13%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-28	-6.652e+01	0.0000	310.0	1.35%	178.7	0.66%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-28	-6.527e+01	0.0000	728.0	3.17%	550.1	2.05%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-26	-6.216e+01	0.0000	1414.0	6.16%	1232.6	4.59%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-26	-6.164e+01	0.0000	248.0	1.08%	134.9	0.50%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-26	-6.114e+01	0.0000	2951.0	12.85%	2849.4	10.60%
NF1:FOXA1/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-26	-6.073e+01	0.0000	144.0	0.63%	59.8	0.22%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-25	-5.959e+01	0.0000	4297.0	18.71%	4323.5	16.08%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-25	-5.940e+01	0.0000	2004.0	8.73%	1851.4	6.89%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-25	-5.859e+01	0.0000	2155.0	9.38%	2014.0	7.49%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-25	-5.853e+01	0.0000	7759.0	33.79%	8214.4	30.56%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-25	-5.761e+01	0.0000	1124.0	4.89%	954.6	3.55%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-24	-5.681e+01	0.0000	8077.0	35.17%	8590.3	31.96%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-24	-5.651e+01	0.0000	286.0	1.25%	170.4	0.63%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-24	-5.628e+01	0.0000	1136.0	4.95%	970.1	3.61%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-23	-5.438e+01	0.0000	4346.0	18.92%	4410.0	16.41%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-23	-5.375e+01	0.0000	1994.0	8.68%	1864.9	6.94%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-23	-5.300e+01	0.0000	1894.0	8.25%	1762.3	6.56%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-21	-5.016e+01	0.0000	2179.0	9.49%	2076.8	7.73%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-21	-4.951e+01	0.0000	3437.0	14.97%	3439.3	12.80%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-21	-4.950e+01	0.0000	1280.0	5.57%	1138.5	4.24%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-21	-4.867e+01	0.0000	3823.0	16.65%	3868.2	14.39%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-21	-4.845e+01	0.0000	679.0	2.96%	541.0	2.01%
Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-19	-4.385e+01	0.0000	3031.0	13.20%	3029.4	11.27%
Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-18	-4.354e+01	0.0000	272.0	1.18%	175.5	0.65%
Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-18	-4.156e+01	0.0000	711.0	3.10%	591.0	2.20%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-17	-4.098e+01	0.0000	5564.0	24.23%	5866.1	21.82%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-17	-4.060e+01	0.0000	2638.0	11.49%	2620.8	9.75%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-17	-3.925e+01	0.0000	523.0	2.28%	413.7	1.54%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-16	-3.866e+01	0.0000	797.0	3.47%	684.0	2.54%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-16	-3.835e+01	0.0000	2013.0	8.77%	1957.7	7.28%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-15	-3.503e+01	0.0000	688.0	3.00%	586.4	2.18%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-14	-3.247e+01	0.0000	1057.0	4.60%	972.8	3.62%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-13	-3.165e+01	0.0000	4345.0	18.92%	4573.7	17.02%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-13	-3.080e+01	0.0000	1615.0	7.03%	1570.1	5.84%
GATA:SCL/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-12	-2.900e+01	0.0000	280.0	1.22%	206.6	0.77%
E2A(HLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-12	-2.897e+01	0.0000	4204.0	18.31%	4439.0	16.51%
USF1(HLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-12	-2.875e+01	0.0000	1042.0	4.54%	972.1	3.62%
Ptf1a(HLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-11	-2.736e+01	0.0000	6959.0	30.30%	7582.4	28.21%
GATA-IR3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-11	-2.727e+01	0.0000	225.0	0.98%	159.8	0.59%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-11	-2.679e+01	0.0000	441.0	1.92%	366.0	1.36%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-11	-2.653e+01	0.0000	2217.0	9.65%	2249.9	8.37%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-11	-2.648e+01	0.0000	433.0	1.89%	358.9	1.34%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-11	-2.603e+01	0.0000	3130.0	13.63%	3263.0	12.14%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-10	-2.429e+01	0.0000	1799.0	7.83%	1807.6	6.72%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-10	-2.331e+01	0.0000	362.0	1.58%	297.3	1.11%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-10	-2.314e+01	0.0000	2821.0	12.28%	2942.6	10.95%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-9	-2.241e+01	0.0000	1982.0	8.63%	2020.9	7.52%
FOXA1:AR/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-9	-2.225e+01	0.0000	118.0	0.51%	73.8	0.27%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-9	-2.210e+01	0.0000	1225.0	5.33%	1199.9	4.46%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-9	-2.206e+01	0.0000	659.0	2.87%	601.5	2.24%
Ap4(HLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-9	-2.188e+01	0.0000	3358.0	14.62%	3553.7	13.22%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-9	-2.162e+01	0.0000	605.0	2.63%	547.5	2.04%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-9	-2.138e+01	0.0000	2821.0	12.28%	2957.7	11.00%
MyoD(HLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-9	-2.101e+01	0.0000	2363.0	10.29%	2452.0	9.12%
NFkB-p65-Rel(RHD)/LPS-exp(GSE23622)/Homer	GGAAATTCCC	1e-9	-2.091e+01	0.0000	138.0	0.60%	92.2	0.34%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-9	-2.073e+01	0.0000	512.0	2.23%	455.7	1.70%
E-box(HLH)/Promoter/Homer	SSGGTCACGTGA	1e-8	-1.966e+01	0.0000	268.0	1.17%	215.4	0.80%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-8	-1.933e+01	0.0000	1503.0	6.54%	1517.8	5.65%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e-8	-1.846e+01	0.0000	755.0	3.29%	717.6	2.67%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-7	-1.752e+01	0.0000	248.0	1.08%	201.1	0.75%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-7	-1.681e+01	0.0000	7065.0	30.76%	7837.3	29.16%
LXRE(NR/DR4)/BLRP(RAW)-LXRb-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-7	-1.635e+01	0.0000	123.0	0.54%	86.4	0.32%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-6	-1.595e+01	0.0000	4736.0	20.62%	5178.6	19.27%
MyoG(HLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-6	-1.475e+01	0.0000	3010.0	13.11%	3234.8	12.03%
GFY-Staf/Promoters/Homer	RACTACAATTCCCAGAAKGC	1e-6	-1.460e+01	0.0000	170.0	0.74%	133.1	0.49%
HNF4a(NR/DR1)/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-6	-1.436e+01	0.0000	1053.0	4.59%	1060.8	3.95%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-6	-1.408e+01	0.0000	760.0	3.31%	745.2	2.77%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-5	-1.327e+01	0.0000	3403.0	14.82%	3696.6	13.75%
BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer	NHAACBGYYV	1e-5	-1.302e+01	0.0000	3200.0	13.93%	3469.4	12.91%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-5	-1.299e+01	0.0000	365.0	1.59%	333.4	1.24%
bHLHE40(HLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-5	-1.249e+01	0.0000	691.0	3.01%	680.8	2.53%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-5	-1.236e+01	0.0000	1473.0	6.41%	1537.9	5.72%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-5	-1.224e+01	0.0000	1801.0	7.84%	1903.9	7.08%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-5	-1.199e+01	0.0000	189.0	0.82%	158.8	0.59%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-5	-1.174e+01	0.0000	5197.0	22.63%	5766.4	21.45%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-4	-1.141e+01	0.0000	1549.0	6.75%	1630.6	6.07%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-4	-1.122e+01	0.0000	1542.0	6.71%	1624.7	6.04%
TR4(NR/DR1)/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-4	-1.119e+01	0.0000	303.0	1.32%	276.1	1.03%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-4	-1.115e+01	0.0000	1151.0	5.01%	1191.9	4.43%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e-4	-1.099e+01	0.0000	1470.0	6.40%	1546.7	5.75%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-4	-1.073e+01	0.0000	61.0	0.27%	40.8	0.15%
CLOCK(HLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-4	-1.065e+01	0.0000	1131.0	4.92%	1173.3	4.36%
GATA-IR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-4	-1.048e+01	0.0001	140.0	0.61%	114.4	0.43%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-4	-1.033e+01	0.0001	616.0	2.68%	612.8	2.28%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-4	-1.013e+01	0.0001	3040.0	13.24%	3325.8	12.37%
NPAS2(HLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-4	-9.990e+00	0.0001	2081.0	9.06%	2241.2	8.34%
NRF1/Promoter/Homer	STGCGCATGCGC	1e-4	-9.760e+00	0.0001	645.0	2.81%	647.8	2.41%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e-4	-9.614e+00	0.0001	1425.0	6.21%	1509.7	5.62%
Pax7-long(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e-4	-9.313e+00	0.0002	30.0	0.13%	16.0	0.06%
GATA-DR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-3	-9.174e+00	0.0002	115.0	0.50%	93.5	0.35%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-3	-9.114e+00	0.0002	330.0	1.44%	313.9	1.17%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-3	-9.056e+00	0.0002	1168.0	5.09%	1228.7	4.57%
PPARE(NR/DR1)/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-3	-9.031e+00	0.0002	2215.0	9.65%	2404.4	8.95%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-3	-8.451e+00	0.0004	1064.0	4.63%	1118.8	4.16%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-3	-8.231e+00	0.0005	3827.0	16.66%	4253.9	15.83%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-3	-7.978e+00	0.0006	1275.0	5.55%	1358.1	5.05%
Srebp2(HLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-3	-7.883e+00	0.0007	297.0	1.29%	284.5	1.06%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-3	-7.539e+00	0.0009	629.0	2.74%	645.1	2.40%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-3	-7.463e+00	0.0010	892.0	3.88%	936.7	3.48%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-3	-7.330e+00	0.0011	1788.0	7.79%	1943.0	7.23%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-3	-7.087e+00	0.0014	4364.0	19.00%	4891.7	18.20%
RXR(NR/DR1)/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-3	-7.076e+00	0.0014	2719.0	11.84%	3005.9	11.18%
BMAL1(HLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-3	-6.916e+00	0.0017	3209.0	13.97%	3568.9	13.28%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-2	-6.665e+00	0.0021	1584.0	6.90%	1721.6	6.40%
Max(HLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-2	-6.537e+00	0.0024	1243.0	5.41%	1338.0	4.98%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e-2	-6.520e+00	0.0024	6164.0	26.84%	6982.2	25.98%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-2	-6.507e+00	0.0024	1061.0	4.62%	1134.4	4.22%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-2	-6.433e+00	0.0026	276.0	1.20%	269.8	1.00%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-2	-6.315e+00	0.0029	524.0	2.28%	539.1	2.01%
ETS:RUNX/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-2	-6.255e+00	0.0031	231.0	1.01%	222.5	0.83%
Egr2/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-2	-6.212e+00	0.0032	595.0	2.59%	618.3	2.30%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e-2	-6.014e+00	0.0039	470.0	2.05%	482.9	1.80%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-2	-5.977e+00	0.0040	1994.0	8.68%	2196.1	8.17%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-2	-5.959e+00	0.0040	99.0	0.43%	86.1	0.32%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-2	-5.816e+00	0.0046	2597.0	11.31%	2887.9	10.74%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e-2	-5.718e+00	0.0051	4669.0	20.33%	5272.6	19.62%
E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e-2	-5.655e+00	0.0053	3652.0	15.90%	4101.9	15.26%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-2	-5.620e+00	0.0055	93.0	0.40%	81.7	0.30%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-2	-5.510e+00	0.0061	357.0	1.55%	362.5	1.35%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-2	-5.322e+00	0.0073	969.0	4.22%	1044.8	3.89%
HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e-2	-5.210e+00	0.0081	506.0	2.20%	528.1	1.96%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-2	-5.140e+00	0.0087	574.0	2.50%	604.7	2.25%
OCT4-SOX2-TCF-NANOG((POU/Homeobox/HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-2	-4.972e+00	0.0102	178.0	0.78%	172.1	0.64%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-2	-4.929e+00	0.0106	3881.0	16.90%	4381.1	16.30%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-2	-4.804e+00	0.0119	792.0	3.45%	851.1	3.17%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-2	-4.739e+00	0.0127	1069.0	4.65%	1164.6	4.33%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-1	-4.557e+00	0.0151	264.0	1.15%	267.4	0.99%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-1	-4.098e+00	0.0238	4018.0	17.50%	4560.7	16.97%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-1	-4.021e+00	0.0255	2150.0	9.36%	2409.8	8.97%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-1	-3.926e+00	0.0279	1277.0	5.56%	1412.6	5.26%
FXR(NR/IR1)/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e-1	-3.914e+00	0.0281	894.0	3.89%	977.8	3.64%
Srebp1a(HLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-1	-3.831e+00	0.0303	396.0	1.72%	418.7	1.56%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529/Homer	CYAAAAATAG	1e-1	-3.723e+00	0.0336	465.0	2.02%	496.6	1.85%
PAX5-shortForm(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-1	-3.500e+00	0.0417	230.0	1.00%	237.1	0.88%
STAT6/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-1	-3.447e+00	0.0438	897.0	3.91%	987.7	3.67%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-1	-3.410e+00	0.0451	203.0	0.88%	208.4	0.78%
PAX3:FKHR-fusion(Paired/Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-1	-3.403e+00	0.0452	262.0	1.14%	273.7	1.02%
Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-1	-3.279e+00	0.0509	419.0	1.82%	449.1	1.67%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-1	-3.274e+00	0.0509	849.0	3.70%	935.5	3.48%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-1	-3.067e+00	0.0623	83.0	0.36%	80.2	0.30%
CEBP(bZIP)/CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-1	-3.061e+00	0.0623	869.0	3.78%	961.9	3.58%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e-1	-2.897e+00	0.0730	481.0	2.09%	523.9	1.95%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-1	-2.840e+00	0.0769	582.0	2.53%	638.6	2.38%
GATA-DR8(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-1	-2.825e+00	0.0776	95.0	0.41%	94.2	0.35%
HIF2a(HLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e-1	-2.820e+00	0.0776	676.0	2.94%	745.7	2.77%
PRDM1/BMI1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-1	-2.809e+00	0.0781	904.0	3.94%	1005.7	3.74%
ISRE(IRF)/ThioMac-LPS-exp(GSE23622)/HOMER	AGTTTCASTTTC	1e-1	-2.688e+00	0.0876	86.0	0.37%	85.5	0.32%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-1	-2.688e+00	0.0876	384.0	1.67%	416.1	1.55%
c-Myc(HLH)/LNCAP-cMyc-ChIP-Seq(unpublished)/Homer	VCCACGTG	1e-1	-2.516e+00	0.1030	1122.0	4.89%	1260.8	4.69%
Pax8(Paired/Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e-1	-2.474e+00	0.1069	787.0	3.43%	877.4	3.26%
ERE(NR/IR3)/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-1	-2.353e+00	0.1200	525.0	2.29%	580.2	2.16%
bZIP:IRF/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-1	-2.307e+00	0.1250	549.0	2.39%	608.8	2.26%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-1.999e+00	0.1692	159.0	0.69%	170.0	0.63%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-1.924e+00	0.1815	186.0	0.81%	201.8	0.75%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-1.878e+00	0.1890	36.0	0.16%	35.7	0.13%
n-Myc(HLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-1.839e+00	0.1955	1367.0	5.95%	1558.8	5.80%
NFAT:AP1/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-1.573e+00	0.2538	218.0	0.95%	241.9	0.90%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-1.548e+00	0.2590	4225.0	18.40%	4890.8	18.20%
NFkB-p50,p52(RHD)/p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e0	-1.419e+00	0.2933	267.0	1.16%	299.2	1.11%
E2F(E2F)/Cell-Cycle-Exp/Homer	TTSGCGCGAAAA	1e0	-1.389e+00	0.3006	145.0	0.63%	160.1	0.60%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-1.269e+00	0.3375	704.0	3.07%	806.5	3.00%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-1.238e+00	0.3462	3555.0	15.48%	4125.1	15.35%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-1.197e+00	0.3589	144.0	0.63%	161.8	0.60%
TRa(NR)/C17.2-TRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-1.195e+00	0.3589	923.0	4.02%	1062.5	3.95%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-1.155e+00	0.3707	402.0	1.75%	459.7	1.71%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-1.078e+00	0.3984	354.0	1.54%	405.9	1.51%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-9.155e-01	0.4667	638.0	2.78%	739.1	2.75%
ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-9.079e-01	0.4681	5214.0	22.70%	6084.4	22.64%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-8.992e-01	0.4699	768.0	3.34%	891.4	3.32%
ETS:E-box/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-8.710e-01	0.4811	198.0	0.86%	228.7	0.85%
CHR/Cell-Cycle-Exp/Homer	SRGTTTCAAA	1e0	-8.454e-01	0.4913	787.0	3.43%	915.7	3.41%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-8.374e-01	0.4930	887.0	3.86%	1032.6	3.84%
Pax7-longest(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-8.358e-01	0.4930	12.0	0.05%	13.7	0.05%
GRE/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-8.323e-01	0.4930	394.0	1.72%	457.3	1.70%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-6.567e-01	0.5825	809.0	3.52%	948.2	3.53%
RBPJ:Ebox/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-5.979e-01	0.6149	742.0	3.23%	872.4	3.25%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-5.882e-01	0.6182	653.0	2.84%	768.0	2.86%
PAX5(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-5.819e-01	0.6192	836.0	3.64%	983.8	3.66%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e0	-4.364e-01	0.7130	110.0	0.48%	133.8	0.50%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-4.157e-01	0.7247	52.0	0.23%	64.8	0.24%
VDR(NR/DR3)/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-4.077e-01	0.7273	385.0	1.68%	460.4	1.71%
Pax7(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-4.052e-01	0.7273	86.0	0.37%	105.7	0.39%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-4.030e-01	0.7273	32.0	0.14%	40.7	0.15%
c-Myc/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-3.973e-01	0.7273	881.0	3.84%	1046.4	3.89%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-2.927e-01	0.7981	151.0	0.66%	186.7	0.69%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-2.927e-01	0.7981	151.0	0.66%	186.7	0.69%
Reverb(NR/DR2)/BLRP(RAW)-Reverba-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-2.491e-01	0.8301	257.0	1.12%	315.2	1.17%
GRE(NR/IR3)/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-2.455e-01	0.8301	221.0	0.96%	272.4	1.01%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-2.093e-01	0.8564	145.0	0.63%	182.0	0.68%
T1ISRE(IRF)/Ifnb-Exp/Homer	ACTTTCGTTTCT	1e0	-1.221e-01	0.9304	7.0	0.03%	12.0	0.04%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-1.171e-01	0.9312	620.0	2.70%	761.3	2.83%
GLI3(Zf)/GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-1.060e-01	0.9375	253.0	1.10%	320.3	1.19%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e0	-1.012e-01	0.9380	1294.0	5.63%	1568.2	5.83%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-9.473e-02	0.9402	1072.0	4.67%	1305.7	4.86%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-8.935e-02	0.9413	8693.0	37.85%	10292.0	38.29%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-2.748e-02	0.9972	3145.0	13.69%	3799.3	14.13%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-6.618e-03	1.0000	2354.0	10.25%	2890.8	10.75%
Mouse_Recombination_Hotspot/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-2.454e-03	1.0000	59.0	0.26%	97.4	0.36%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-1.750e-03	1.0000	242.0	1.05%	339.0	1.26%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-6.240e-04	1.0000	1332.0	5.80%	1696.4	6.31%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-1.160e-04	1.0000	961.0	4.18%	1260.6	4.69%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-0.000e+00	1.0000	269.0	1.17%	441.0	1.64%