Information for motif14


Reverse Opposite:

p-value:1e-130
log p-value:-3.002e+02
Information Content per bp:1.815
Number of Target Sequences with motif1382.0
Percentage of Target Sequences with motif5.35%
Number of Background Sequences with motif460.3
Percentage of Background Sequences with motif2.61%
Average Position of motif in Targets99.8 +/- 54.3bp
Average Position of motif in Background98.2 +/- 58.9bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:1
Score:0.92
Offset:1
Orientation:forward strand
Alignment:GTAATCCC-
-TAATCCCN

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:2
Score:0.87
Offset:-1
Orientation:forward strand
Alignment:-GTAATCCC
GCTAATCC-

PH0137.1_Pitx1/Jaspar

Match Rank:3
Score:0.87
Offset:-4
Orientation:reverse strand
Alignment:----GTAATCCC-----
NTTGTTAATCCCTCTNN

PH0130.1_Otx2/Jaspar

Match Rank:4
Score:0.86
Offset:-5
Orientation:reverse strand
Alignment:-----GTAATCCC----
GANNATTAATCCCTNNN

PH0139.1_Pitx3/Jaspar

Match Rank:5
Score:0.86
Offset:-5
Orientation:reverse strand
Alignment:-----GTAATCCC---
GNNAGCTAATCCCCCN

PH0138.1_Pitx2/Jaspar

Match Rank:6
Score:0.86
Offset:-5
Orientation:reverse strand
Alignment:-----GTAATCCC----
GNNNATTAATCCCTNCN

PH0129.1_Otx1/Jaspar

Match Rank:7
Score:0.85
Offset:-5
Orientation:reverse strand
Alignment:-----GTAATCCC----
NNNAATTAATCCCCNCN

PH0015.1_Crx/Jaspar

Match Rank:8
Score:0.85
Offset:-3
Orientation:reverse strand
Alignment:---GTAATCCC-----
AGGCTAATCCCCAANG

PH0035.1_Gsc/Jaspar

Match Rank:9
Score:0.85
Offset:-5
Orientation:forward strand
Alignment:-----GTAATCCC----
AATCGTTAATCCCTTTA

PH0124.1_Obox5_1/Jaspar

Match Rank:10
Score:0.85
Offset:-5
Orientation:reverse strand
Alignment:-----GTAATCCC----
NANANTTAATCCCNNNN