Information for motif23


Reverse Opposite:

p-value:1e-63
log p-value:-1.462e+02
Information Content per bp:1.706
Number of Target Sequences with motif83.0
Percentage of Target Sequences with motif0.32%
Number of Background Sequences with motif4.8
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets101.7 +/- 53.5bp
Average Position of motif in Background40.7 +/- 15.2bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0101.1_REL/Jaspar

Match Rank:1
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--GGGTTTCCCGGG
GGGGATTTCC----

MF0003.1_REL_class/Jaspar

Match Rank:2
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GGGTTTCCCGGG
GGGGATTTCC---

MA0107.1_RELA/Jaspar

Match Rank:3
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--GGGTTTCCCGGG
GGGAATTTCC----

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:4
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---GGGTTTCCCGGG
NGGGGATTTCCC---

MA0105.3_NFKB1/Jaspar

Match Rank:5
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--GGGTTTCCCGGG
GGGAATTTCCC---

MA0137.3_STAT1/Jaspar

Match Rank:6
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:GGGTTTCCCGGG--
---TTTCCTGGAAA

MA0144.2_STAT3/Jaspar

Match Rank:7
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:GGGTTTCCCGGG--
---TTTCCCAGAAN

Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:GGGTTTCCCGGG--
----TTCCNGGAAG

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GGGTTTCCCGGG
TGGTTTCAGT--

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:10
Score:0.61
Offset:2
Orientation:forward strand
Alignment:GGGTTTCCCGGG
--HTTTCCCASG