Information for motif3


Reverse Opposite:

p-value:1e-427
log p-value:-9.837e+02
Information Content per bp:1.716
Number of Target Sequences with motif1435.0
Percentage of Target Sequences with motif5.56%
Number of Background Sequences with motif236.7
Percentage of Background Sequences with motif1.34%
Average Position of motif in Targets98.1 +/- 49.7bp
Average Position of motif in Background107.5 +/- 77.6bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.87
Offset:-7
Orientation:forward strand
Alignment:-------GCCAYCTGGTGG-
CNNBRGCGCCCCCTGSTGGC

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer

Match Rank:2
Score:0.87
Offset:-5
Orientation:forward strand
Alignment:-----GCCAYCTGGTGG---
ANAGTGCCACCTGGTGGCCA

MA0139.1_CTCF/Jaspar

Match Rank:3
Score:0.86
Offset:-4
Orientation:reverse strand
Alignment:----GCCAYCTGGTGG---
TAGCGCCCCCTGGTGGCCA

MA0461.1_Atoh1/Jaspar

Match Rank:4
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:GCCAYCTGGTGG
GCCATCTG----

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:5
Score:0.70
Offset:0
Orientation:forward strand
Alignment:GCCAYCTGGTGG
GCCATCTGTT--

PB0101.1_Zic1_1/Jaspar

Match Rank:6
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GCCAYCTGGTGG-
CACCCCCGGGGGGG

PB0103.1_Zic3_1/Jaspar

Match Rank:7
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GCCAYCTGGTGG--
NCCCCCCCGGGGGGN

Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer

Match Rank:8
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GCCAYCTGGTGG
GCCAGCTGBTNB

PB0102.1_Zic2_1/Jaspar

Match Rank:9
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GCCAYCTGGTGG--
ACCCCCCCGGGGGGN

Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer

Match Rank:10
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GCCAYCTGGTGG
RCCATMTGTT--