Information for motif4


Reverse Opposite:

p-value:1e-401
log p-value:-9.248e+02
Information Content per bp:1.798
Number of Target Sequences with motif6722.0
Percentage of Target Sequences with motif26.04%
Number of Background Sequences with motif2758.9
Percentage of Background Sequences with motif15.62%
Average Position of motif in Targets100.4 +/- 54.0bp
Average Position of motif in Background97.8 +/- 58.5bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:1
Score:0.95
Offset:0
Orientation:forward strand
Alignment:TAATTAGC
TAATTAGN

PB0031.1_Hoxa3_1/Jaspar

Match Rank:2
Score:0.92
Offset:-2
Orientation:reverse strand
Alignment:--TAATTAGC----
GTTAATTANCTCNN

PH0131.1_Pax4/Jaspar

Match Rank:3
Score:0.91
Offset:-5
Orientation:forward strand
Alignment:-----TAATTAGC----
TGAACTAATTAGCCCAC

PH0036.1_Gsx2/Jaspar

Match Rank:4
Score:0.91
Offset:-4
Orientation:forward strand
Alignment:----TAATTAGC----
AGGTTAATTAGCTGAT

Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer

Match Rank:5
Score:0.91
Offset:-3
Orientation:forward strand
Alignment:---TAATTAGC
ADBTAATTAR-

PH0045.1_Hoxa1/Jaspar

Match Rank:6
Score:0.90
Offset:-4
Orientation:reverse strand
Alignment:----TAATTAGC----
ACGGTAATTAGCTCAG

PH0050.1_Hoxa3/Jaspar

Match Rank:7
Score:0.90
Offset:-6
Orientation:forward strand
Alignment:------TAATTAGC
TTGAGGTAATTAGT

PH0032.1_Evx2/Jaspar

Match Rank:8
Score:0.90
Offset:-5
Orientation:reverse strand
Alignment:-----TAATTAGC----
ANCGCTAATTAGCGGTN

PH0074.1_Hoxd1/Jaspar

Match Rank:9
Score:0.90
Offset:-5
Orientation:forward strand
Alignment:-----TAATTAGC----
TAAACTAATTAGCTGTA

PH0097.1_Lhx6_2/Jaspar

Match Rank:10
Score:0.90
Offset:-5
Orientation:forward strand
Alignment:-----TAATTAGC----
TCCACTAATTAGCGGTT