Information for motif6


Reverse Opposite:

p-value:1e-248
log p-value:-5.725e+02
Information Content per bp:1.673
Number of Target Sequences with motif2673.0
Percentage of Target Sequences with motif10.36%
Number of Background Sequences with motif905.4
Percentage of Background Sequences with motif5.13%
Average Position of motif in Targets98.6 +/- 52.8bp
Average Position of motif in Background101.5 +/- 79.8bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.95
Offset:2
Orientation:forward strand
Alignment:NNCHCAGCAGGR--
--CACAGCAGGGGG

PB0205.1_Zic1_2/Jaspar

Match Rank:2
Score:0.90
Offset:-1
Orientation:forward strand
Alignment:-NNCHCAGCAGGR--
CCACACAGCAGGAGA

PB0206.1_Zic2_2/Jaspar

Match Rank:3
Score:0.89
Offset:-1
Orientation:forward strand
Alignment:-NNCHCAGCAGGR--
CCACACAGCAGGAGA

PB0207.1_Zic3_2/Jaspar

Match Rank:4
Score:0.89
Offset:-1
Orientation:forward strand
Alignment:-NNCHCAGCAGGR--
GAGCACAGCAGGACA

Ap4(HLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:5
Score:0.75
Offset:1
Orientation:forward strand
Alignment:NNCHCAGCAGGR
-NAHCAGCTGD-

MA0461.1_Atoh1/Jaspar

Match Rank:6
Score:0.74
Offset:4
Orientation:forward strand
Alignment:NNCHCAGCAGGR
----CAGATGGC

SCL(HLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:7
Score:0.74
Offset:4
Orientation:reverse strand
Alignment:NNCHCAGCAGGR
----CAGCTGNT

Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.71
Offset:3
Orientation:forward strand
Alignment:NNCHCAGCAGGR-
---NCAGCTGCTG

MyoG(HLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer

Match Rank:9
Score:0.70
Offset:2
Orientation:forward strand
Alignment:NNCHCAGCAGGR
--AACAGCTG--

MA0500.1_Myog/Jaspar

Match Rank:10
Score:0.69
Offset:2
Orientation:forward strand
Alignment:NNCHCAGCAGGR-
--GACAGCTGCAG