Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 25817)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 17668)	% of Background Sequences with Motif
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-795	-1.831e+03	0.0000	5197.0	20.13%	1436.4	8.13%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-788	-1.815e+03	0.0000	4414.0	17.10%	1104.5	6.25%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-608	-1.400e+03	0.0000	1556.0	6.03%	197.0	1.12%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-594	-1.370e+03	0.0000	1866.0	7.23%	290.8	1.65%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-588	-1.355e+03	0.0000	3809.0	14.76%	1028.7	5.82%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-567	-1.307e+03	0.0000	4307.0	16.69%	1271.4	7.20%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-549	-1.265e+03	0.0000	5545.0	21.48%	1888.6	10.69%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-502	-1.158e+03	0.0000	3172.0	12.29%	837.8	4.74%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-474	-1.092e+03	0.0000	2924.0	11.33%	759.2	4.30%
Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-460	-1.061e+03	0.0000	4497.0	17.42%	1492.2	8.45%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-304	-7.001e+02	0.0000	1878.0	7.28%	482.9	2.73%
Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-300	-6.928e+02	0.0000	3162.0	12.25%	1066.9	6.04%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-288	-6.649e+02	0.0000	4900.0	18.98%	1984.5	11.24%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-251	-5.797e+02	0.0000	3341.0	12.94%	1232.0	6.98%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-248	-5.727e+02	0.0000	5772.0	22.36%	2560.7	14.50%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-233	-5.369e+02	0.0000	3223.0	12.49%	1204.5	6.82%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-225	-5.193e+02	0.0000	6699.0	25.95%	3162.9	17.91%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-223	-5.149e+02	0.0000	4949.0	19.17%	2155.4	12.20%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-213	-4.924e+02	0.0000	6719.0	26.03%	3208.6	18.17%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e-204	-4.712e+02	0.0000	6089.0	23.59%	2862.2	16.21%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-173	-4.001e+02	0.0000	6958.0	26.96%	3480.4	19.71%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-147	-3.390e+02	0.0000	11033.0	42.75%	6173.3	34.95%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-127	-2.926e+02	0.0000	1503.0	5.82%	523.0	2.96%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-124	-2.861e+02	0.0000	5505.0	21.33%	2775.1	15.71%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-118	-2.734e+02	0.0000	5021.0	19.45%	2504.4	14.18%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-114	-2.646e+02	0.0000	9999.0	38.74%	5652.2	32.00%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-113	-2.617e+02	0.0000	10700.0	41.46%	6118.0	34.64%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-109	-2.513e+02	0.0000	3276.0	12.69%	1514.0	8.57%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-100	-2.316e+02	0.0000	1484.0	5.75%	559.9	3.17%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-95	-2.202e+02	0.0000	2289.0	8.87%	997.0	5.64%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-90	-2.078e+02	0.0000	906.0	3.51%	294.8	1.67%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-80	-1.857e+02	0.0000	2381.0	9.22%	1090.8	6.18%
SCL(HLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-65	-1.511e+02	0.0000	13464.0	52.16%	8270.1	46.82%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-64	-1.486e+02	0.0000	1504.0	5.83%	648.4	3.67%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-57	-1.314e+02	0.0000	1059.0	4.10%	428.9	2.43%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-54	-1.244e+02	0.0000	772.0	2.99%	287.8	1.63%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-53	-1.240e+02	0.0000	348.0	1.35%	91.1	0.52%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-49	-1.129e+02	0.0000	1704.0	6.60%	805.3	4.56%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-49	-1.129e+02	0.0000	486.0	1.88%	157.5	0.89%
Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-45	-1.057e+02	0.0000	3446.0	13.35%	1858.5	10.52%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-45	-1.046e+02	0.0000	5306.0	20.56%	3027.5	17.14%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-45	-1.037e+02	0.0000	1815.0	7.03%	883.4	5.00%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-44	-1.032e+02	0.0000	2848.0	11.03%	1498.8	8.49%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-44	-1.015e+02	0.0000	3518.0	13.63%	1912.8	10.83%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-42	-9.839e+01	0.0000	98.0	0.38%	11.8	0.07%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-42	-9.696e+01	0.0000	588.0	2.28%	217.7	1.23%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-41	-9.618e+01	0.0000	377.0	1.46%	117.1	0.66%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-40	-9.440e+01	0.0000	1114.0	4.32%	498.7	2.82%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-39	-9.149e+01	0.0000	3011.0	11.67%	1623.9	9.19%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-39	-9.127e+01	0.0000	500.0	1.94%	178.7	1.01%
E2A(HLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-39	-9.118e+01	0.0000	4887.0	18.93%	2799.5	15.85%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-39	-9.105e+01	0.0000	4737.0	18.35%	2704.6	15.31%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-39	-9.097e+01	0.0000	3414.0	13.23%	1873.4	10.61%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-38	-8.854e+01	0.0000	502.0	1.94%	181.7	1.03%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-38	-8.775e+01	0.0000	1495.0	5.79%	723.9	4.10%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-37	-8.749e+01	0.0000	794.0	3.08%	332.4	1.88%
Ptf1a(HLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-37	-8.634e+01	0.0000	8105.0	31.40%	4904.8	27.77%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-37	-8.601e+01	0.0000	4179.0	16.19%	2366.0	13.40%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-36	-8.305e+01	0.0000	1725.0	6.68%	865.5	4.90%
E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e-34	-8.031e+01	0.0000	4517.0	17.50%	2596.1	14.70%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-34	-7.968e+01	0.0000	3491.0	13.53%	1950.7	11.04%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-33	-7.618e+01	0.0000	1714.0	6.64%	871.1	4.93%
GFY-Staf/Promoters/Homer	RACTACAATTCCCAGAAKGC	1e-32	-7.461e+01	0.0000	166.0	0.64%	38.9	0.22%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-32	-7.434e+01	0.0000	1693.0	6.56%	862.5	4.88%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-31	-7.354e+01	0.0000	804.0	3.11%	353.5	2.00%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-31	-7.319e+01	0.0000	3127.0	12.11%	1740.3	9.85%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-31	-7.315e+01	0.0000	1503.0	5.82%	752.3	4.26%
Oct2(POU/Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-31	-7.305e+01	0.0000	594.0	2.30%	241.4	1.37%
Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-31	-7.252e+01	0.0000	998.0	3.87%	462.5	2.62%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-30	-6.964e+01	0.0000	1494.0	5.79%	753.8	4.27%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-29	-6.897e+01	0.0000	1395.0	5.40%	696.1	3.94%
CTCF-SatelliteElement/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-28	-6.575e+01	0.0000	99.0	0.38%	17.6	0.10%
E-box(HLH)/Promoter/Homer	SSGGTCACGTGA	1e-27	-6.422e+01	0.0000	219.0	0.85%	64.2	0.36%
NF1:FOXA1/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-27	-6.326e+01	0.0000	204.0	0.79%	58.2	0.33%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-27	-6.265e+01	0.0000	1837.0	7.12%	972.2	5.50%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-27	-6.259e+01	0.0000	1990.0	7.71%	1065.0	6.03%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-25	-5.966e+01	0.0000	1803.0	6.99%	958.9	5.43%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-25	-5.827e+01	0.0000	1561.0	6.05%	815.8	4.62%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-24	-5.732e+01	0.0000	1102.0	4.27%	545.1	3.09%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-24	-5.710e+01	0.0000	750.0	2.91%	344.8	1.95%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-24	-5.690e+01	0.0000	217.0	0.84%	67.8	0.38%
Ap4(HLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-23	-5.454e+01	0.0000	3870.0	14.99%	2267.8	12.84%
GATA:SCL/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-22	-5.246e+01	0.0000	414.0	1.60%	167.9	0.95%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-21	-4.890e+01	0.0000	612.0	2.37%	278.4	1.58%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-20	-4.829e+01	0.0000	2447.0	9.48%	1385.1	7.84%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-19	-4.588e+01	0.0000	1216.0	4.71%	634.2	3.59%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-19	-4.570e+01	0.0000	707.0	2.74%	336.8	1.91%
Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-19	-4.465e+01	0.0000	340.0	1.32%	136.0	0.77%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-19	-4.426e+01	0.0000	1343.0	5.20%	714.5	4.05%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e-17	-4.122e+01	0.0000	889.0	3.44%	449.5	2.54%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-17	-4.104e+01	0.0000	285.0	1.10%	111.9	0.63%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-17	-3.982e+01	0.0000	2095.0	8.12%	1190.4	6.74%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-17	-3.957e+01	0.0000	1508.0	5.84%	826.0	4.68%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-16	-3.820e+01	0.0000	3306.0	12.81%	1966.9	11.14%
TR4(NR/DR1)/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-16	-3.737e+01	0.0000	395.0	1.53%	173.1	0.98%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-15	-3.612e+01	0.0000	1823.0	7.06%	1031.0	5.84%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-15	-3.591e+01	0.0000	498.0	1.93%	232.7	1.32%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-15	-3.507e+01	0.0000	554.0	2.15%	265.7	1.50%
BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer	NHAACBGYYV	1e-15	-3.495e+01	0.0000	3766.0	14.59%	2277.8	12.90%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-14	-3.313e+01	0.0000	2434.0	9.43%	1427.4	8.08%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-13	-3.206e+01	0.0000	481.0	1.86%	228.3	1.29%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-13	-3.123e+01	0.0000	36.0	0.14%	5.8	0.03%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-13	-3.007e+01	0.0000	540.0	2.09%	265.8	1.50%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-12	-2.973e+01	0.0000	738.0	2.86%	382.7	2.17%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-12	-2.929e+01	0.0000	4343.0	16.83%	2682.0	15.18%
Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-12	-2.786e+01	0.0000	703.0	2.72%	365.2	2.07%
Pax7-long(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e-11	-2.697e+01	0.0000	62.0	0.24%	15.0	0.09%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-11	-2.667e+01	0.0000	3910.0	15.15%	2411.2	13.65%
MyoG(HLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-11	-2.633e+01	0.0000	3413.0	13.22%	2088.7	11.83%
FOXA1:AR/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-11	-2.620e+01	0.0000	139.0	0.54%	50.6	0.29%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-11	-2.588e+01	0.0000	2249.0	8.71%	1337.8	7.57%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-10	-2.481e+01	0.0000	7908.0	30.64%	5079.8	28.76%
Pax7(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e-10	-2.449e+01	0.0000	172.0	0.67%	68.4	0.39%
Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-10	-2.334e+01	0.0000	590.0	2.29%	307.7	1.74%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-9	-2.276e+01	0.0000	847.0	3.28%	464.5	2.63%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-9	-2.229e+01	0.0000	453.0	1.76%	229.0	1.30%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e-9	-2.106e+01	0.0000	1820.0	7.05%	1082.8	6.13%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e-8	-2.025e+01	0.0000	7283.0	28.22%	4694.1	26.58%
HNF4a(NR/DR1)/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-8	-2.005e+01	0.0000	1286.0	4.98%	746.6	4.23%
GATA-IR3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-8	-1.920e+01	0.0000	306.0	1.19%	148.9	0.84%
MyoD(HLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-8	-1.859e+01	0.0000	2537.0	9.83%	1557.1	8.82%
GATA-IR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-7	-1.830e+01	0.0000	177.0	0.69%	77.6	0.44%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-7	-1.820e+01	0.0000	5706.0	22.11%	3654.9	20.69%
GATA-DR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-7	-1.784e+01	0.0000	176.0	0.68%	77.2	0.44%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-7	-1.772e+01	0.0000	416.0	1.61%	215.6	1.22%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-7	-1.757e+01	0.0000	3275.0	12.69%	2046.8	11.59%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-7	-1.745e+01	0.0000	679.0	2.63%	375.9	2.13%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-7	-1.612e+01	0.0000	3906.0	15.13%	2472.9	14.00%
OCT4-SOX2-TCF-NANOG((POU/Homeobox/HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-6	-1.606e+01	0.0000	314.0	1.22%	159.0	0.90%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-6	-1.571e+01	0.0000	335.0	1.30%	171.7	0.97%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-6	-1.410e+01	0.0000	103.0	0.40%	42.6	0.24%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-5	-1.369e+01	0.0000	2988.0	11.58%	1882.6	10.66%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-5	-1.352e+01	0.0000	869.0	3.37%	506.0	2.86%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-5	-1.310e+01	0.0000	427.0	1.65%	232.1	1.31%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e-5	-1.215e+01	0.0000	5617.0	21.76%	3646.7	20.65%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-5	-1.196e+01	0.0000	1979.0	7.67%	1230.2	6.96%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-5	-1.193e+01	0.0000	427.0	1.65%	235.1	1.33%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-5	-1.192e+01	0.0000	1158.0	4.49%	697.4	3.95%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-5	-1.190e+01	0.0000	3138.0	12.16%	1995.0	11.29%
Srebp1a(HLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-4	-1.141e+01	0.0000	483.0	1.87%	271.8	1.54%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-4	-1.110e+01	0.0000	2415.0	9.36%	1522.1	8.62%
PAX3:FKHR-fusion(Paired/Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-4	-1.094e+01	0.0000	364.0	1.41%	199.9	1.13%
GATA-DR8(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-4	-1.069e+01	0.0000	127.0	0.49%	59.8	0.34%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-4	-1.066e+01	0.0000	953.0	3.69%	571.1	3.23%
Egr2/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-4	-1.025e+01	0.0001	503.0	1.95%	287.8	1.63%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-4	-1.025e+01	0.0001	2524.0	9.78%	1600.4	9.06%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-4	-1.019e+01	0.0001	1244.0	4.82%	761.5	4.31%
CEBP(bZIP)/CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-4	-1.004e+01	0.0001	1062.0	4.11%	644.5	3.65%
NRF1/Promoter/Homer	STGCGCATGCGC	1e-4	-9.679e+00	0.0001	500.0	1.94%	287.7	1.63%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e-4	-9.585e+00	0.0001	571.0	2.21%	332.5	1.88%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-4	-9.483e+00	0.0001	4631.0	17.94%	3011.7	17.05%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-3	-8.999e+00	0.0002	5644.0	21.87%	3697.9	20.94%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-3	-8.977e+00	0.0002	274.0	1.06%	149.4	0.85%
PPARE(NR/DR1)/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-3	-8.907e+00	0.0002	2546.0	9.86%	1625.7	9.20%
RXR(NR/DR1)/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-3	-8.816e+00	0.0002	3091.0	11.98%	1989.0	11.26%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e-3	-8.800e+00	0.0002	778.0	3.01%	467.9	2.65%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-3	-8.773e+00	0.0002	5842.0	22.63%	3833.1	21.70%
LXRE(NR/DR4)/BLRP(RAW)-LXRb-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-3	-8.598e+00	0.0003	132.0	0.51%	65.2	0.37%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-3	-8.439e+00	0.0003	1246.0	4.83%	772.5	4.37%
PRDM1/BMI1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-3	-8.146e+00	0.0004	1113.0	4.31%	687.6	3.89%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-3	-7.892e+00	0.0006	104.0	0.40%	50.0	0.28%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-3	-7.799e+00	0.0006	4998.0	19.36%	3276.9	18.55%
USF1(HLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-2	-6.626e+00	0.0020	989.0	3.83%	615.3	3.48%
E2F(E2F)/Cell-Cycle-Exp/Homer	TTSGCGCGAAAA	1e-2	-6.511e+00	0.0022	129.0	0.50%	67.6	0.38%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-2	-6.474e+00	0.0023	112.0	0.43%	57.1	0.32%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-2	-6.183e+00	0.0031	718.0	2.78%	442.0	2.50%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e-2	-6.113e+00	0.0033	33.0	0.13%	13.5	0.08%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-2	-5.952e+00	0.0038	1719.0	6.66%	1101.9	6.24%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-2	-5.914e+00	0.0039	1356.0	5.25%	861.5	4.88%
NFkB-p65-Rel(RHD)/LPS-exp(GSE23622)/Homer	GGAAATTCCC	1e-2	-5.659e+00	0.0050	136.0	0.53%	73.4	0.42%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-2	-5.355e+00	0.0068	120.0	0.46%	64.1	0.36%
bZIP:IRF/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-2	-5.127e+00	0.0085	715.0	2.77%	445.9	2.52%
STAT6/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-2	-4.843e+00	0.0112	1115.0	4.32%	710.6	4.02%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-1	-4.591e+00	0.0143	2091.0	8.10%	1362.8	7.72%
TRa(NR)/C17.2-TRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-1	-4.449e+00	0.0164	1006.0	3.90%	641.1	3.63%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e-1	-4.429e+00	0.0167	1327.0	5.14%	854.3	4.84%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-1	-4.052e+00	0.0242	2627.0	10.18%	1728.3	9.79%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-1	-3.992e+00	0.0255	757.0	2.93%	480.3	2.72%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-1	-3.964e+00	0.0261	1086.0	4.21%	699.0	3.96%
CLOCK(HLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-1	-3.767e+00	0.0316	1127.0	4.37%	727.6	4.12%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-1	-3.659e+00	0.0350	629.0	2.44%	398.3	2.25%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-1	-3.475e+00	0.0419	580.0	2.25%	367.3	2.08%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-1	-3.321e+00	0.0485	4269.0	16.54%	2848.8	16.13%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e-1	-3.311e+00	0.0488	1053.0	4.08%	682.1	3.86%
RBPJ:Ebox/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-1	-3.201e+00	0.0541	793.0	3.07%	510.9	2.89%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-1	-3.099e+00	0.0596	1753.0	6.79%	1153.2	6.53%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-1	-2.945e+00	0.0692	5044.0	19.54%	3381.9	19.15%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e-1	-2.845e+00	0.0760	220.0	0.85%	135.3	0.77%
ETS:RUNX/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-2.261e+00	0.1357	217.0	0.84%	136.5	0.77%
Srebp2(HLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-2.226e+00	0.1398	326.0	1.26%	208.8	1.18%
T1ISRE(IRF)/Ifnb-Exp/Homer	ACTTTCGTTTCT	1e0	-2.010e+00	0.1726	16.0	0.06%	8.6	0.05%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-1.974e+00	0.1779	421.0	1.63%	273.1	1.55%
bHLHE40(HLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-1.821e+00	0.2064	628.0	2.43%	413.2	2.34%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-1.691e+00	0.2337	1022.0	3.96%	680.3	3.85%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-1.683e+00	0.2343	171.0	0.66%	109.5	0.62%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-1.528e+00	0.2724	1513.0	5.86%	1015.3	5.75%
CHR/Cell-Cycle-Exp/Homer	SRGTTTCAAA	1e0	-1.374e+00	0.3159	1028.0	3.98%	689.0	3.90%
NFAT:AP1/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-9.253e-01	0.4925	275.0	1.07%	185.9	1.05%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-8.791e-01	0.5132	967.0	3.75%	657.4	3.72%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-8.348e-01	0.5338	222.0	0.86%	150.9	0.85%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-6.900e-01	0.6139	31.0	0.12%	21.7	0.12%
ISRE(IRF)/ThioMac-LPS-exp(GSE23622)/HOMER	AGTTTCASTTTC	1e0	-6.534e-01	0.6336	89.0	0.34%	61.3	0.35%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-5.682e-01	0.6865	4135.0	16.02%	2836.8	16.06%
GRE(NR/IR3)/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-3.997e-01	0.8086	239.0	0.93%	168.7	0.96%
c-Myc(HLH)/LNCAP-cMyc-ChIP-Seq(unpublished)/Homer	VCCACGTG	1e0	-3.627e-01	0.8350	1016.0	3.94%	706.3	4.00%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-3.107e-01	0.8752	159.0	0.62%	114.3	0.65%
n-Myc(HLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-2.775e-01	0.9005	1375.0	5.33%	958.2	5.42%
FXR(NR/IR1)/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e0	-2.179e-01	0.9512	923.0	3.58%	649.9	3.68%
ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-2.145e-01	0.9512	5185.0	20.09%	3586.9	20.31%
GLI3(Zf)/GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-1.869e-01	0.9717	278.0	1.08%	201.6	1.14%
GRE/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-1.787e-01	0.9751	430.0	1.67%	308.3	1.75%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e0	-1.562e-01	0.9926	1577.0	6.11%	1107.5	6.27%
NPAS2(HLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-1.540e-01	0.9926	2152.0	8.34%	1505.3	8.52%
Max(HLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-1.529e-01	0.9926	1275.0	4.94%	898.8	5.09%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.382e-01	0.9926	154.0	0.60%	115.1	0.65%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.382e-01	0.9926	154.0	0.60%	115.1	0.65%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-1.239e-01	1.0000	298.0	1.15%	218.9	1.24%
Mouse_Recombination_Hotspot/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-1.081e-01	1.0000	86.0	0.33%	67.2	0.38%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-8.013e-02	1.0000	510.0	1.98%	371.7	2.10%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-6.385e-02	1.0000	790.0	3.06%	570.4	3.23%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-5.595e-02	1.0000	1002.0	3.88%	720.4	4.08%
Pax7-longest(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-4.849e-02	1.0000	26.0	0.10%	24.7	0.14%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e0	-4.415e-02	1.0000	144.0	0.56%	113.7	0.64%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-3.740e-02	1.0000	3658.0	14.17%	2572.0	14.56%
BMAL1(HLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-1.926e-02	1.0000	3384.0	13.11%	2393.6	13.55%
PAX5(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-1.860e-02	1.0000	827.0	3.20%	607.3	3.44%
PAX5-shortForm(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-1.505e-02	1.0000	251.0	0.97%	196.1	1.11%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529/Homer	CYAAAAATAG	1e0	-1.052e-02	1.0000	578.0	2.24%	434.1	2.46%
Reverb(NR/DR2)/BLRP(RAW)-Reverba-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-5.735e-03	1.0000	286.0	1.11%	226.8	1.28%
ETS:E-box/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-2.639e-03	1.0000	221.0	0.86%	181.1	1.03%
c-Myc/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-1.690e-03	1.0000	916.0	3.55%	688.4	3.90%
HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-1.123e-03	1.0000	434.0	1.68%	342.6	1.94%
Pax8(Paired/Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-8.300e-04	1.0000	765.0	2.96%	584.8	3.31%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-4.800e-04	1.0000	490.0	1.90%	387.9	2.20%
HIF2a(HLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-3.030e-04	1.0000	610.0	2.36%	477.9	2.71%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-2.170e-04	1.0000	1518.0	5.88%	1132.6	6.41%
ERE(NR/IR3)/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-1.280e-04	1.0000	539.0	2.09%	429.3	2.43%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-1.000e-05	1.0000	263.0	1.02%	231.6	1.31%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-7.000e-06	1.0000	54.0	0.21%	63.9	0.36%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-1.000e-06	1.0000	1424.0	5.52%	1098.1	6.22%
VDR(NR/DR3)/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-1.000e-06	1.0000	424.0	1.64%	363.0	2.06%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-0.000e+00	1.0000	1076.0	4.17%	880.5	4.99%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-0.000e+00	1.0000	9759.0	37.81%	7015.7	39.72%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-0.000e+00	1.0000	309.0	1.20%	303.5	1.72%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-0.000e+00	1.0000	692.0	2.68%	630.8	3.57%
NFkB-p50,p52(RHD)/p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e0	0.000e+00	1.0000	234.0	0.91%	290.0	1.64%