Information for motif13


Reverse Opposite:

p-value:1e-42
log p-value:-9.831e+01
Information Content per bp:1.573
Number of Target Sequences with motif56.0
Percentage of Target Sequences with motif0.22%
Number of Background Sequences with motif4.5
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets88.7 +/- 50.9bp
Average Position of motif in Background124.5 +/- 63.5bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0124.1_Obox5_1/Jaspar

Match Rank:1
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---ACTTAATCACCT--
NANANTTAATCCCNNNN

PH0121.1_Obox1/Jaspar

Match Rank:2
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--ACTTAATCACCT---
NTAGTTAATCCCCTTAN

PH0073.1_Hoxc9/Jaspar

Match Rank:3
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--ACTTAATCACCT--
NNAATTAATGACCNNN

PH0129.1_Otx1/Jaspar

Match Rank:4
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---ACTTAATCACCT--
NNNAATTAATCCCCNCN

PH0125.1_Obox5_2/Jaspar

Match Rank:5
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---ACTTAATCACCT--
GATAATTAATCCCTCTT

PH0122.1_Obox2/Jaspar

Match Rank:6
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--ACTTAATCACCT---
ATAGTTAATCCCCCTCA

PH0123.1_Obox3/Jaspar

Match Rank:7
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--ACTTAATCACCT---
ATAGTTAATCCCCCNNA

MA0467.1_Crx/Jaspar

Match Rank:8
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:ACTTAATCACCT-
--CTAATCCTCTT

PH0130.1_Otx2/Jaspar

Match Rank:9
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---ACTTAATCACCT--
GANNATTAATCCCTNNN

MA0468.1_DUX4/Jaspar

Match Rank:10
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--ACTTAATCACCT
TAATTTAATCA---