Information for motif16


Reverse Opposite:

p-value:1e-26
log p-value:-6.111e+01
Information Content per bp:1.880
Number of Target Sequences with motif32.0
Percentage of Target Sequences with motif0.12%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets85.7 +/- 47.7bp
Average Position of motif in Background115.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0137.1_Pitx1/Jaspar

Match Rank:1
Score:0.79
Offset:-5
Orientation:reverse strand
Alignment:-----TAATCCCTTTGM
NTTGTTAATCCCTCTNN

PH0035.1_Gsc/Jaspar

Match Rank:2
Score:0.78
Offset:-6
Orientation:forward strand
Alignment:------TAATCCCTTTGM
AATCGTTAATCCCTTTA-

PH0121.1_Obox1/Jaspar

Match Rank:3
Score:0.78
Offset:-5
Orientation:reverse strand
Alignment:-----TAATCCCTTTGM
NTAGTTAATCCCCTTAN

PH0125.1_Obox5_2/Jaspar

Match Rank:4
Score:0.77
Offset:-6
Orientation:forward strand
Alignment:------TAATCCCTTTGM
GATAATTAATCCCTCTT-

MA0467.1_Crx/Jaspar

Match Rank:5
Score:0.76
Offset:-1
Orientation:reverse strand
Alignment:-TAATCCCTTTGM
CTAATCCTCTT--

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:6
Score:0.76
Offset:0
Orientation:forward strand
Alignment:TAATCCCTTTGM
TAATCCCN----

PH0130.1_Otx2/Jaspar

Match Rank:7
Score:0.76
Offset:-6
Orientation:reverse strand
Alignment:------TAATCCCTTTGM
GANNATTAATCCCTNNN-

PH0138.1_Pitx2/Jaspar

Match Rank:8
Score:0.76
Offset:-6
Orientation:reverse strand
Alignment:------TAATCCCTTTGM
GNNNATTAATCCCTNCN-

PH0126.1_Obox6/Jaspar

Match Rank:9
Score:0.76
Offset:-3
Orientation:reverse strand
Alignment:---TAATCCCTTTGM
CNATAATCCGNTTNT

PH0124.1_Obox5_1/Jaspar

Match Rank:10
Score:0.74
Offset:-6
Orientation:reverse strand
Alignment:------TAATCCCTTTGM
NANANTTAATCCCNNNN-