Information for motif21


Reverse Opposite:

p-value:1e-17
log p-value:-3.991e+01
Information Content per bp:1.530
Number of Target Sequences with motif24.0
Percentage of Target Sequences with motif0.09%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets94.3 +/- 53.6bp
Average Position of motif in Background88.1 +/- 38.3bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0137.1_Pitx1/Jaspar

Match Rank:1
Score:0.68
Offset:-5
Orientation:reverse strand
Alignment:-----GAATCCCTCC--
NTTGTTAATCCCTCTNN

PH0130.1_Otx2/Jaspar

Match Rank:2
Score:0.65
Offset:-6
Orientation:reverse strand
Alignment:------GAATCCCTCC-
GANNATTAATCCCTNNN

PH0123.1_Obox3/Jaspar

Match Rank:3
Score:0.65
Offset:-5
Orientation:reverse strand
Alignment:-----GAATCCCTCC--
ATAGTTAATCCCCCNNA

PH0125.1_Obox5_2/Jaspar

Match Rank:4
Score:0.65
Offset:-6
Orientation:forward strand
Alignment:------GAATCCCTCC-
GATAATTAATCCCTCTT

PH0138.1_Pitx2/Jaspar

Match Rank:5
Score:0.65
Offset:-6
Orientation:reverse strand
Alignment:------GAATCCCTCC-
GNNNATTAATCCCTNCN

PH0122.1_Obox2/Jaspar

Match Rank:6
Score:0.65
Offset:-5
Orientation:reverse strand
Alignment:-----GAATCCCTCC--
ATAGTTAATCCCCCTCA

PH0129.1_Otx1/Jaspar

Match Rank:7
Score:0.64
Offset:-6
Orientation:reverse strand
Alignment:------GAATCCCTCC-
NNNAATTAATCCCCNCN

PH0124.1_Obox5_1/Jaspar

Match Rank:8
Score:0.64
Offset:-6
Orientation:reverse strand
Alignment:------GAATCCCTCC-
NANANTTAATCCCNNNN

PH0139.1_Pitx3/Jaspar

Match Rank:9
Score:0.62
Offset:-6
Orientation:reverse strand
Alignment:------GAATCCCTCC
GNNAGCTAATCCCCCN

MA0471.1_E2F6/Jaspar

Match Rank:10
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GAATCCCTCC-
NCTTCCCGCCC