Information for motif23


Reverse Opposite:

p-value:1e-11
log p-value:-2.748e+01
Information Content per bp:1.530
Number of Target Sequences with motif28.0
Percentage of Target Sequences with motif0.11%
Number of Background Sequences with motif5.6
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets96.4 +/- 50.7bp
Average Position of motif in Background47.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0151.1_ARID3A/Jaspar

Match Rank:1
Score:0.74
Offset:1
Orientation:forward strand
Alignment:AATTAAAGCT
-ATTAAA---

MA0075.1_Prrx2/Jaspar

Match Rank:2
Score:0.71
Offset:0
Orientation:forward strand
Alignment:AATTAAAGCT
AATTA-----

PH0041.1_Hmx1/Jaspar

Match Rank:3
Score:0.70
Offset:-6
Orientation:forward strand
Alignment:------AATTAAAGCT-
ACAAGCAATTAATGAAT

PH0156.1_Rax/Jaspar

Match Rank:4
Score:0.70
Offset:-7
Orientation:reverse strand
Alignment:-------AATTAAAGCT
NNGCGCTAATTAGTGCA

PH0011.1_Alx1_2/Jaspar

Match Rank:5
Score:0.70
Offset:-7
Orientation:reverse strand
Alignment:-------AATTAAAGCT
NNNAATTAATTAANGNG

PH0002.1_Alx4/Jaspar

Match Rank:6
Score:0.69
Offset:-7
Orientation:reverse strand
Alignment:-------AATTAAAGCT
GNNNATTAATTAATGCG

PH0054.1_Hoxa7_1/Jaspar

Match Rank:7
Score:0.69
Offset:-7
Orientation:reverse strand
Alignment:-------AATTAAAGCT
GNNNATTAATTAANNCG

MA0158.1_HOXA5/Jaspar

Match Rank:8
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:AATTAAAGCT
AATTAGTG--

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:9
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---AATTAAAGCT
NGCAATTAAA---

PH0010.1_Alx1_1/Jaspar

Match Rank:10
Score:0.69
Offset:-7
Orientation:reverse strand
Alignment:-------AATTAAAGCT
GNNNATTAATTAATNCG