Information for motif24


Reverse Opposite:

p-value:1e-11
log p-value:-2.745e+01
Information Content per bp:1.507
Number of Target Sequences with motif44.0
Percentage of Target Sequences with motif0.17%
Number of Background Sequences with motif12.3
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets86.9 +/- 49.6bp
Average Position of motif in Background120.0 +/- 38.2bp
Strand Bias (log2 ratio + to - strand density)1.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0006.1_Barhl2/Jaspar

Match Rank:1
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-GAGACCAATTAA---
AAAAACCAATTAAGAA

PH0107.1_Msx2/Jaspar

Match Rank:2
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-GAGACCAATTAA----
GAAGACCAATTAGCGCT

PH0108.1_Msx3/Jaspar

Match Rank:3
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-GAGACCAATTAA---
CAAAACCAATTAATTT

PH0005.1_Barhl1/Jaspar

Match Rank:4
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-GAGACCAATTAA---
AACAACCAATTAATTC

MA0125.1_Nobox/Jaspar

Match Rank:5
Score:0.69
Offset:3
Orientation:reverse strand
Alignment:GAGACCAATTAA
---ACCAATTA-

PH0041.1_Hmx1/Jaspar

Match Rank:6
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GAGACCAATTAA-----
ACAAGCAATTAATGAAT

PB0072.1_Sox5_1/Jaspar

Match Rank:7
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--GAGACCAATTAA--
TTTAGAACAATAAAAT

PB0062.1_Sox12_1/Jaspar

Match Rank:8
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---GAGACCAATTAA
NTTNAGAACAATTA-

PH0042.1_Hmx2/Jaspar

Match Rank:9
Score:0.67
Offset:0
Orientation:forward strand
Alignment:GAGACCAATTAA-----
ACAAGCAATTAAAGAAT

PB0066.1_Sox17_1/Jaspar

Match Rank:10
Score:0.66
Offset:0
Orientation:forward strand
Alignment:GAGACCAATTAA---
ATAAACAATTAAACA