Information for motif4


Reverse Opposite:

p-value:1e-330
log p-value:-7.605e+02
Information Content per bp:1.449
Number of Target Sequences with motif5253.0
Percentage of Target Sequences with motif20.35%
Number of Background Sequences with motif3036.1
Percentage of Background Sequences with motif11.85%
Average Position of motif in Targets100.3 +/- 53.8bp
Average Position of motif in Background99.3 +/- 60.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:1
Score:0.89
Offset:-1
Orientation:reverse strand
Alignment:-CTAATTAGCA
NCTAATTA---

Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer

Match Rank:2
Score:0.88
Offset:0
Orientation:reverse strand
Alignment:CTAATTAGCA
YTAATTAVHT

PH0097.1_Lhx6_2/Jaspar

Match Rank:3
Score:0.88
Offset:-4
Orientation:forward strand
Alignment:----CTAATTAGCA---
TCCACTAATTAGCGGTT

PB0031.1_Hoxa3_1/Jaspar

Match Rank:4
Score:0.88
Offset:-1
Orientation:reverse strand
Alignment:-CTAATTAGCA---
GTTAATTANCTCNN

PH0131.1_Pax4/Jaspar

Match Rank:5
Score:0.87
Offset:-4
Orientation:forward strand
Alignment:----CTAATTAGCA---
TGAACTAATTAGCCCAC

PH0155.1_Prrx2/Jaspar

Match Rank:6
Score:0.87
Offset:-5
Orientation:reverse strand
Alignment:-----CTAATTAGCA--
NTTCGCTAATTAGCTNT

PH0098.1_Lhx8/Jaspar

Match Rank:7
Score:0.87
Offset:-4
Orientation:forward strand
Alignment:----CTAATTAGCA---
ACCCCTAATTAGCGGTG

PH0050.1_Hoxa3/Jaspar

Match Rank:8
Score:0.86
Offset:-1
Orientation:reverse strand
Alignment:-CTAATTAGCA---
ACTAATTANCNCNA

PH0074.1_Hoxd1/Jaspar

Match Rank:9
Score:0.86
Offset:-4
Orientation:forward strand
Alignment:----CTAATTAGCA---
TAAACTAATTAGCTGTA

PH0081.1_Pdx1/Jaspar

Match Rank:10
Score:0.86
Offset:-3
Orientation:forward strand
Alignment:---CTAATTAGCA---
AAGGTAATTAGCTCAT