Information for motif5


Reverse Opposite:

p-value:1e-261
log p-value:-6.011e+02
Information Content per bp:1.810
Number of Target Sequences with motif9094.0
Percentage of Target Sequences with motif35.23%
Number of Background Sequences with motif6539.8
Percentage of Background Sequences with motif25.53%
Average Position of motif in Targets99.9 +/- 55.1bp
Average Position of motif in Background100.4 +/- 58.6bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.23
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:1
Score:0.90
Offset:1
Orientation:forward strand
Alignment:TCCTTTGT-
-CCWTTGTY

MA0143.3_Sox2/Jaspar

Match Rank:2
Score:0.89
Offset:1
Orientation:forward strand
Alignment:TCCTTTGT-
-CCTTTGTT

PB0061.1_Sox11_1/Jaspar

Match Rank:3
Score:0.87
Offset:-3
Orientation:reverse strand
Alignment:---TCCTTTGT------
NNNTCCTTTGTTCTNNN

PB0071.1_Sox4_1/Jaspar

Match Rank:4
Score:0.87
Offset:-3
Orientation:reverse strand
Alignment:---TCCTTTGT------
TNNTCCTTTGTTCTNNT

PB0166.1_Sox12_2/Jaspar

Match Rank:5
Score:0.87
Offset:-2
Orientation:reverse strand
Alignment:--TCCTTTGT------
ANTCCTTTGTCTNNNN

MA0514.1_Sox3/Jaspar

Match Rank:6
Score:0.86
Offset:1
Orientation:forward strand
Alignment:TCCTTTGT---
-CCTTTGTTTT

MA0442.1_SOX10/Jaspar

Match Rank:7
Score:0.84
Offset:2
Orientation:forward strand
Alignment:TCCTTTGT
--CTTTGT

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:8
Score:0.83
Offset:1
Orientation:forward strand
Alignment:TCCTTTGT---
-CCATTGTTNY

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.83
Offset:0
Orientation:forward strand
Alignment:TCCTTTGT--
NCCATTGTTC

MA0515.1_Sox6/Jaspar

Match Rank:10
Score:0.82
Offset:1
Orientation:forward strand
Alignment:TCCTTTGT---
-CCATTGTTTT