Information for motif6


Reverse Opposite:

p-value:1e-183
log p-value:-4.233e+02
Information Content per bp:1.724
Number of Target Sequences with motif2344.0
Percentage of Target Sequences with motif9.08%
Number of Background Sequences with motif1225.4
Percentage of Background Sequences with motif4.78%
Average Position of motif in Targets98.8 +/- 53.5bp
Average Position of motif in Background103.6 +/- 56.7bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0207.1_Zic3_2/Jaspar

Match Rank:1
Score:0.95
Offset:-3
Orientation:reverse strand
Alignment:---CCYGCTGTGA--
NNTCCTGCTGTGNNN

PB0206.1_Zic2_2/Jaspar

Match Rank:2
Score:0.94
Offset:-3
Orientation:reverse strand
Alignment:---CCYGCTGTGA--
TCNCCTGCTGNGNNN

PB0205.1_Zic1_2/Jaspar

Match Rank:3
Score:0.93
Offset:-3
Orientation:reverse strand
Alignment:---CCYGCTGTGA--
TNTCCTGCTGTGNNG

Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.89
Offset:-3
Orientation:reverse strand
Alignment:---CCYGCTGTGA
CCCCCTGCTGTG-

POL009.1_DCE_S_II/Jaspar

Match Rank:5
Score:0.75
Offset:3
Orientation:forward strand
Alignment:CCYGCTGTGA
---GCTGTG-

MA0461.1_Atoh1/Jaspar

Match Rank:6
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-CCYGCTGTGA
GCCATCTG---

POL010.1_DCE_S_III/Jaspar

Match Rank:7
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:CCYGCTGTGA
--NGCTN---

ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer

Match Rank:8
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CCYGCTGTGA---
RGSMTBCTGGGAAAT

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:9
Score:0.63
Offset:2
Orientation:forward strand
Alignment:CCYGCTGTGA--
--TGCTGACTCA

Ap4(HLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:10
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CCYGCTGTGA
HCAGCTGDTN