Information for motif7


Reverse Opposite:

p-value:1e-178
log p-value:-4.115e+02
Information Content per bp:1.574
Number of Target Sequences with motif2405.0
Percentage of Target Sequences with motif9.32%
Number of Background Sequences with motif1282.1
Percentage of Background Sequences with motif5.00%
Average Position of motif in Targets101.6 +/- 53.4bp
Average Position of motif in Background100.3 +/- 55.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:1
Score:0.95
Offset:1
Orientation:reverse strand
Alignment:RAGGTGTKAA-
-AGGTGTTAAT

Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer

Match Rank:2
Score:0.95
Offset:1
Orientation:forward strand
Alignment:RAGGTGTKAA-
-AGGTGTGAAM

PB0013.1_Eomes_1/Jaspar

Match Rank:3
Score:0.91
Offset:-3
Orientation:forward strand
Alignment:---RAGGTGTKAA----
GAAAAGGTGTGAAAATT

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:4
Score:0.89
Offset:1
Orientation:forward strand
Alignment:RAGGTGTKAA
-AGGTGTCA-

MA0009.1_T/Jaspar

Match Rank:5
Score:0.86
Offset:-1
Orientation:forward strand
Alignment:-RAGGTGTKAA
CTAGGTGTGAA

PH0164.1_Six4/Jaspar

Match Rank:6
Score:0.72
Offset:-3
Orientation:reverse strand
Alignment:---RAGGTGTKAA----
TNNNNGGTGTCATNTNT

PH0170.1_Tgif2/Jaspar

Match Rank:7
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---RAGGTGTKAA---
AACTAGCTGTCAATAC

E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:8
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--RAGGTGTKAA
NNCAGGTGNN--

PH0102.1_Meis1/Jaspar

Match Rank:9
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---RAGGTGTKAA---
AACGAGCTGTCAATAC

PH0158.1_Rhox11_2/Jaspar

Match Rank:10
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---RAGGTGTKAA----
AGGACGCTGTAAAGGGA