Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 25817)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 25638)	% of Background Sequences with Motif
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-879	-2.026e+03	0.0000	5197.0	20.13%	1969.0	7.68%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-841	-1.937e+03	0.0000	4414.0	17.10%	1538.3	6.00%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-646	-1.489e+03	0.0000	3809.0	14.76%	1413.3	5.52%
Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-559	-1.289e+03	0.0000	4497.0	17.42%	1984.7	7.75%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-542	-1.249e+03	0.0000	4307.0	16.69%	1885.2	7.36%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-541	-1.247e+03	0.0000	1556.0	6.03%	321.8	1.26%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-501	-1.155e+03	0.0000	3172.0	12.29%	1216.8	4.75%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-498	-1.148e+03	0.0000	5545.0	21.48%	2845.8	11.11%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-489	-1.127e+03	0.0000	2924.0	11.33%	1081.4	4.22%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-444	-1.023e+03	0.0000	1866.0	7.23%	538.7	2.10%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-307	-7.091e+02	0.0000	1878.0	7.28%	694.2	2.71%
Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-255	-5.892e+02	0.0000	3162.0	12.25%	1646.9	6.43%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-245	-5.647e+02	0.0000	4900.0	18.98%	3014.0	11.76%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-230	-5.305e+02	0.0000	3341.0	12.94%	1842.7	7.19%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-229	-5.282e+02	0.0000	5772.0	22.36%	3785.9	14.78%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-221	-5.104e+02	0.0000	4949.0	19.17%	3133.8	12.23%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-215	-4.963e+02	0.0000	3223.0	12.49%	1793.1	7.00%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-199	-4.591e+02	0.0000	6699.0	25.95%	4700.6	18.35%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-192	-4.441e+02	0.0000	6719.0	26.03%	4747.4	18.53%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e-182	-4.191e+02	0.0000	6089.0	23.59%	4250.1	16.59%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-155	-3.590e+02	0.0000	6958.0	26.96%	5140.7	20.06%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-133	-3.076e+02	0.0000	11033.0	42.75%	9048.4	35.32%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-128	-2.955e+02	0.0000	3276.0	12.69%	2116.7	8.26%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-127	-2.938e+02	0.0000	9999.0	38.74%	8108.8	31.65%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-108	-2.509e+02	0.0000	5505.0	21.33%	4111.9	16.05%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-94	-2.173e+02	0.0000	1484.0	5.75%	828.1	3.23%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-68	-1.574e+02	0.0000	10700.0	41.46%	9265.9	36.16%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-66	-1.532e+02	0.0000	2381.0	9.22%	1646.3	6.43%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-66	-1.526e+02	0.0000	906.0	3.51%	481.6	1.88%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-64	-1.492e+02	0.0000	5021.0	19.45%	3968.3	15.49%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-62	-1.442e+02	0.0000	486.0	1.88%	203.4	0.79%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-57	-1.327e+02	0.0000	1503.0	5.82%	966.6	3.77%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-57	-1.321e+02	0.0000	500.0	1.94%	221.6	0.86%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-54	-1.251e+02	0.0000	502.0	1.94%	228.5	0.89%
SCL(HLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-51	-1.188e+02	0.0000	13464.0	52.16%	12155.3	47.44%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-49	-1.133e+02	0.0000	1704.0	6.60%	1167.8	4.56%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-47	-1.100e+02	0.0000	794.0	3.08%	450.1	1.76%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-44	-1.013e+02	0.0000	2289.0	8.87%	1691.9	6.60%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-42	-9.747e+01	0.0000	5306.0	20.56%	4421.5	17.26%
Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-41	-9.621e+01	0.0000	998.0	3.87%	627.1	2.45%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-41	-9.585e+01	0.0000	377.0	1.46%	170.7	0.67%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-38	-8.884e+01	0.0000	1395.0	5.40%	963.5	3.76%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-38	-8.833e+01	0.0000	1504.0	5.83%	1055.3	4.12%
Ptf1a(HLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-35	-8.108e+01	0.0000	8105.0	31.40%	7143.3	27.88%
E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e-35	-8.095e+01	0.0000	4517.0	17.50%	3763.7	14.69%
Oct2(POU/Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-34	-8.005e+01	0.0000	594.0	2.30%	340.7	1.33%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-34	-7.906e+01	0.0000	1102.0	4.27%	742.8	2.90%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-34	-7.886e+01	0.0000	772.0	2.99%	478.4	1.87%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-33	-7.648e+01	0.0000	98.0	0.38%	21.5	0.08%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-32	-7.591e+01	0.0000	348.0	1.35%	168.0	0.66%
E2A(HLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-32	-7.462e+01	0.0000	4887.0	18.93%	4135.9	16.14%
CTCF-SatelliteElement/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-30	-7.101e+01	0.0000	99.0	0.38%	23.1	0.09%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-30	-7.047e+01	0.0000	1495.0	5.79%	1091.5	4.26%
Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-28	-6.503e+01	0.0000	3446.0	13.35%	2848.4	11.12%
NF1:FOXA1/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-28	-6.490e+01	0.0000	204.0	0.79%	83.1	0.32%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-25	-5.911e+01	0.0000	3127.0	12.11%	2582.6	10.08%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-25	-5.787e+01	0.0000	1503.0	5.82%	1133.1	4.42%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-25	-5.782e+01	0.0000	2447.0	9.48%	1970.5	7.69%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-24	-5.745e+01	0.0000	1059.0	4.10%	754.2	2.94%
GATA:SCL/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-24	-5.556e+01	0.0000	414.0	1.60%	238.7	0.93%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-22	-5.197e+01	0.0000	4737.0	18.35%	4113.5	16.06%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-22	-5.144e+01	0.0000	804.0	3.11%	555.1	2.17%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-20	-4.800e+01	0.0000	4179.0	16.19%	3612.0	14.10%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-20	-4.733e+01	0.0000	3518.0	13.63%	3000.0	11.71%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-20	-4.634e+01	0.0000	1693.0	6.56%	1338.3	5.22%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-19	-4.477e+01	0.0000	3414.0	13.23%	2916.8	11.38%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-19	-4.443e+01	0.0000	2848.0	11.03%	2394.9	9.35%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-17	-4.050e+01	0.0000	3906.0	15.13%	3400.0	13.27%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-16	-3.839e+01	0.0000	2434.0	9.43%	2043.4	7.98%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-16	-3.788e+01	0.0000	3011.0	11.67%	2579.5	10.07%
Pax7-long(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e-16	-3.760e+01	0.0000	62.0	0.24%	17.7	0.07%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-15	-3.666e+01	0.0000	498.0	1.93%	335.6	1.31%
Ap4(HLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-14	-3.390e+01	0.0000	3870.0	14.99%	3408.7	13.30%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-14	-3.383e+01	0.0000	285.0	1.10%	171.4	0.67%
Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-14	-3.304e+01	0.0000	340.0	1.32%	215.1	0.84%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-14	-3.266e+01	0.0000	1494.0	5.79%	1213.8	4.74%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-14	-3.265e+01	0.0000	1815.0	7.03%	1504.1	5.87%
TR4(NR/DR1)/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-14	-3.238e+01	0.0000	395.0	1.53%	260.7	1.02%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-13	-3.136e+01	0.0000	1714.0	6.64%	1418.6	5.54%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-13	-3.123e+01	0.0000	1823.0	7.06%	1518.9	5.93%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-13	-3.015e+01	0.0000	554.0	2.15%	396.6	1.55%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-12	-2.973e+01	0.0000	1803.0	6.99%	1508.0	5.89%
GFY-Staf/Promoters/Homer	RACTACAATTCCCAGAAKGC	1e-12	-2.962e+01	0.0000	166.0	0.64%	88.6	0.35%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-12	-2.880e+01	0.0000	679.0	2.63%	506.5	1.98%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-12	-2.817e+01	0.0000	707.0	2.74%	532.2	2.08%
Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-12	-2.764e+01	0.0000	590.0	2.29%	433.7	1.69%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-11	-2.690e+01	0.0000	1244.0	4.82%	1012.5	3.95%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-11	-2.561e+01	0.0000	4998.0	19.36%	4545.7	17.74%
OCT4-SOX2-TCF-NANOG((POU/Homeobox/HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-10	-2.445e+01	0.0000	314.0	1.22%	210.6	0.82%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-10	-2.422e+01	0.0000	588.0	2.28%	441.0	1.72%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-10	-2.405e+01	0.0000	1114.0	4.32%	907.3	3.54%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-10	-2.396e+01	0.0000	1979.0	7.67%	1700.4	6.64%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-10	-2.351e+01	0.0000	3491.0	13.53%	3124.4	12.19%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-10	-2.342e+01	0.0000	1725.0	6.68%	1468.5	5.73%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-10	-2.309e+01	0.0000	750.0	2.91%	586.7	2.29%
GATA-IR3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-9	-2.272e+01	0.0000	306.0	1.19%	207.7	0.81%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-9	-2.265e+01	0.0000	1990.0	7.71%	1718.8	6.71%
FOXA1:AR/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-9	-2.231e+01	0.0000	139.0	0.54%	77.7	0.30%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-9	-2.215e+01	0.0000	481.0	1.86%	355.2	1.39%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-9	-2.213e+01	0.0000	1837.0	7.12%	1579.5	6.16%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e-9	-2.166e+01	0.0000	1820.0	7.05%	1566.7	6.12%
GATA-DR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-9	-2.075e+01	0.0000	176.0	0.68%	107.4	0.42%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-8	-2.049e+01	0.0000	1508.0	5.84%	1285.0	5.02%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-8	-2.006e+01	0.0000	5842.0	22.63%	5412.2	21.12%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-8	-1.947e+01	0.0000	540.0	2.09%	414.3	1.62%
E-box(HLH)/Promoter/Homer	SSGGTCACGTGA	1e-8	-1.946e+01	0.0000	219.0	0.85%	143.8	0.56%
HNF4a(NR/DR1)/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-8	-1.932e+01	0.0000	1286.0	4.98%	1086.3	4.24%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-8	-1.916e+01	0.0000	2249.0	8.71%	1983.4	7.74%
Pax7(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e-8	-1.878e+01	0.0000	172.0	0.67%	107.5	0.42%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-7	-1.837e+01	0.0000	738.0	2.86%	593.2	2.32%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-7	-1.802e+01	0.0000	416.0	1.61%	311.9	1.22%
MyoG(HLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-7	-1.787e+01	0.0000	3413.0	13.22%	3097.7	12.09%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-7	-1.743e+01	0.0000	847.0	3.28%	695.6	2.71%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-7	-1.722e+01	0.0000	2524.0	9.78%	2257.3	8.81%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-7	-1.673e+01	0.0000	1343.0	5.20%	1153.0	4.50%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-7	-1.669e+01	0.0000	2095.0	8.12%	1856.1	7.24%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-7	-1.642e+01	0.0000	5706.0	22.11%	5321.9	20.77%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-6	-1.587e+01	0.0000	1158.0	4.49%	987.2	3.85%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-6	-1.517e+01	0.0000	3306.0	12.81%	3021.0	11.79%
GATA-IR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-6	-1.483e+01	0.0000	177.0	0.69%	118.4	0.46%
USF1(HLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-6	-1.468e+01	0.0000	989.0	3.83%	838.6	3.27%
Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-6	-1.428e+01	0.0000	703.0	2.72%	579.3	2.26%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-5	-1.362e+01	0.0000	1753.0	6.79%	1557.1	6.08%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-5	-1.356e+01	0.0000	612.0	2.37%	500.6	1.95%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-5	-1.315e+01	0.0000	274.0	1.06%	203.9	0.80%
MyoD(HLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-5	-1.277e+01	0.0000	2537.0	9.83%	2308.8	9.01%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-5	-1.260e+01	0.0000	217.0	0.84%	156.8	0.61%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e-5	-1.180e+01	0.0000	5617.0	21.76%	5294.8	20.67%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-4	-1.148e+01	0.0000	2988.0	11.58%	2753.2	10.75%
NFkB-p65-Rel(RHD)/LPS-exp(GSE23622)/Homer	GGAAATTCCC	1e-4	-1.115e+01	0.0000	136.0	0.53%	92.9	0.36%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-4	-1.104e+01	0.0000	7908.0	30.64%	7546.1	29.45%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e-4	-1.063e+01	0.0000	889.0	3.44%	769.2	3.00%
LXRE(NR/DR4)/BLRP(RAW)-LXRb-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-4	-1.053e+01	0.0000	132.0	0.51%	90.8	0.35%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-4	-1.035e+01	0.0001	3910.0	15.15%	3656.5	14.27%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-4	-1.012e+01	0.0001	3138.0	12.16%	2913.7	11.37%
PPARE(NR/DR1)/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-4	-9.539e+00	0.0001	2546.0	9.86%	2350.5	9.17%
PAX3:FKHR-fusion(Paired/Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-3	-9.084e+00	0.0002	364.0	1.41%	296.7	1.16%
RXR(NR/DR1)/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-3	-9.038e+00	0.0002	3091.0	11.98%	2881.5	11.25%
Egr2/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-3	-8.497e+00	0.0004	503.0	1.95%	425.8	1.66%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-3	-8.423e+00	0.0004	112.0	0.43%	78.4	0.31%
BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer	NHAACBGYYV	1e-3	-8.418e+00	0.0004	3766.0	14.59%	3543.1	13.83%
PAX5-shortForm(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-3	-8.364e+00	0.0004	251.0	0.97%	198.2	0.77%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-3	-8.137e+00	0.0005	104.0	0.40%	72.6	0.28%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-3	-7.624e+00	0.0008	1561.0	6.05%	1427.2	5.57%
PRDM1/BMI1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-3	-7.618e+00	0.0008	1113.0	4.31%	1001.1	3.91%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-3	-7.594e+00	0.0008	869.0	3.37%	771.9	3.01%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e-3	-7.273e+00	0.0012	7283.0	28.22%	7001.6	27.33%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-2	-6.501e+00	0.0025	453.0	1.76%	390.5	1.52%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-2	-6.470e+00	0.0026	1246.0	4.83%	1138.1	4.44%
Pax8(Paired/Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e-2	-6.439e+00	0.0026	765.0	2.96%	682.7	2.66%
NRF1/Promoter/Homer	STGCGCATGCGC	1e-2	-6.430e+00	0.0026	500.0	1.94%	434.7	1.70%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-2	-6.225e+00	0.0032	1513.0	5.86%	1396.0	5.45%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-2	-5.982e+00	0.0041	427.0	1.65%	369.5	1.44%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-2	-5.732e+00	0.0052	2627.0	10.18%	2478.6	9.67%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-2	-5.622e+00	0.0057	4343.0	16.83%	4152.2	16.21%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-2	-5.501e+00	0.0064	5644.0	21.87%	5430.0	21.19%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-2	-5.488e+00	0.0065	1719.0	6.66%	1603.7	6.26%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-2	-4.996e+00	0.0105	120.0	0.46%	94.3	0.37%
GATA-DR8(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-2	-4.760e+00	0.0132	127.0	0.49%	101.4	0.40%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-2	-4.732e+00	0.0135	953.0	3.69%	876.1	3.42%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-1	-4.494e+00	0.0171	4269.0	16.54%	4104.0	16.02%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-1	-4.491e+00	0.0171	967.0	3.75%	892.8	3.48%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-1	-4.396e+00	0.0186	171.0	0.66%	142.8	0.56%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-1	-4.234e+00	0.0217	36.0	0.14%	24.3	0.09%
CLOCK(HLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-1	-3.967e+00	0.0282	1127.0	4.37%	1052.9	4.11%
Srebp2(HLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-1	-3.921e+00	0.0294	326.0	1.26%	288.1	1.12%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-1	-3.889e+00	0.0302	790.0	3.06%	730.0	2.85%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-1	-3.699e+00	0.0362	335.0	1.30%	298.2	1.16%
TRa(NR)/C17.2-TRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-1	-3.606e+00	0.0395	1006.0	3.90%	940.7	3.67%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-1	-3.531e+00	0.0424	3275.0	12.69%	3151.7	12.30%
bHLHE40(HLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-1	-3.405e+00	0.0477	628.0	2.43%	579.7	2.26%
Max(HLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-1	-3.395e+00	0.0480	1275.0	4.94%	1203.2	4.70%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-1	-3.300e+00	0.0524	103.0	0.40%	85.7	0.33%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-1	-3.236e+00	0.0556	4135.0	16.02%	4002.0	15.62%
E2F(E2F)/Cell-Cycle-Exp/Homer	TTSGCGCGAAAA	1e-1	-3.230e+00	0.0556	129.0	0.50%	109.9	0.43%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-1	-3.187e+00	0.0577	1086.0	4.21%	1023.1	3.99%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-1	-3.165e+00	0.0587	2091.0	8.10%	2001.0	7.81%
bZIP:IRF/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-1	-3.095e+00	0.0625	715.0	2.77%	666.7	2.60%
ETS:E-box/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-1	-2.960e+00	0.0712	221.0	0.86%	196.8	0.77%
STAT6/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-1	-2.927e+00	0.0732	1115.0	4.32%	1055.4	4.12%
NFAT:AP1/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-1	-2.811e+00	0.0818	275.0	1.07%	248.4	0.97%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-1	-2.582e+00	0.1022	427.0	1.65%	395.2	1.54%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-1	-2.516e+00	0.1086	1216.0	4.71%	1160.4	4.53%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-1	-2.404e+00	0.1208	4631.0	17.94%	4515.6	17.62%
Srebp1a(HLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-2.298e+00	0.1336	483.0	1.87%	452.5	1.77%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-2.143e+00	0.1551	222.0	0.86%	203.2	0.79%
Pax7-longest(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-2.130e+00	0.1563	26.0	0.10%	20.9	0.08%
n-Myc(HLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-2.114e+00	0.1580	1375.0	5.33%	1323.7	5.17%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-2.059e+00	0.1660	421.0	1.63%	395.8	1.54%
c-Myc(HLH)/LNCAP-cMyc-ChIP-Seq(unpublished)/Homer	VCCACGTG	1e0	-2.021e+00	0.1716	1016.0	3.94%	974.8	3.80%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-2.017e+00	0.1716	778.0	3.01%	742.1	2.90%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-1.993e+00	0.1747	1356.0	5.25%	1307.6	5.10%
FXR(NR/IR1)/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e0	-1.979e+00	0.1761	923.0	3.58%	885.0	3.45%
PAX5(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-1.943e+00	0.1817	827.0	3.20%	792.0	3.09%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-1.760e+00	0.2171	159.0	0.62%	146.5	0.57%
RBPJ:Ebox/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-1.709e+00	0.2272	793.0	3.07%	762.2	2.98%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-1.618e+00	0.2475	5044.0	19.54%	4953.5	19.33%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-1.604e+00	0.2497	220.0	0.85%	206.4	0.81%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e0	-1.576e+00	0.2555	1577.0	6.11%	1534.4	5.99%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-1.557e+00	0.2593	298.0	1.15%	282.1	1.10%
CEBP(bZIP)/CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-1.539e+00	0.2628	1062.0	4.11%	1029.3	4.02%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-1.311e+00	0.3283	580.0	2.25%	561.2	2.19%
ETS:RUNX/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-1.248e+00	0.3480	217.0	0.84%	207.9	0.81%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-1.005e+00	0.4415	2415.0	9.36%	2381.8	9.30%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-8.098e-01	0.5339	3658.0	14.17%	3623.8	14.14%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e0	-7.607e-01	0.5581	1327.0	5.14%	1314.9	5.13%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-7.494e-01	0.5617	1022.0	3.96%	1012.9	3.95%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-7.259e-01	0.5723	757.0	2.93%	751.0	2.93%
CHR/Cell-Cycle-Exp/Homer	SRGTTTCAAA	1e0	-6.954e-01	0.5872	1028.0	3.98%	1020.2	3.98%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-6.743e-01	0.5969	718.0	2.78%	713.4	2.78%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-6.025e-01	0.6352	154.0	0.60%	154.7	0.60%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-6.025e-01	0.6352	154.0	0.60%	154.7	0.60%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e0	-5.800e-01	0.6467	571.0	2.21%	570.0	2.22%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-5.341e-01	0.6738	1002.0	3.88%	1001.3	3.91%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-5.297e-01	0.6738	1053.0	4.08%	1052.8	4.11%
c-Myc/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-4.981e-01	0.6921	916.0	3.55%	917.0	3.58%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e0	-4.915e-01	0.6935	144.0	0.56%	146.1	0.57%
ISRE(IRF)/ThioMac-LPS-exp(GSE23622)/HOMER	AGTTTCASTTTC	1e0	-4.712e-01	0.7044	89.0	0.34%	91.8	0.36%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-3.989e-01	0.7538	33.0	0.13%	35.1	0.14%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-3.931e-01	0.7548	31.0	0.12%	33.8	0.13%
Reverb(NR/DR2)/BLRP(RAW)-Reverba-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-3.122e-01	0.8146	286.0	1.11%	294.8	1.15%
GLI3(Zf)/GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-2.602e-01	0.8542	278.0	1.08%	288.9	1.13%
T1ISRE(IRF)/Ifnb-Exp/Homer	ACTTTCGTTTCT	1e0	-2.303e-01	0.8763	16.0	0.06%	19.2	0.07%
ERE(NR/IR3)/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-2.100e-01	0.8902	539.0	2.09%	555.1	2.17%
GRE/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-1.758e-01	0.9171	430.0	1.67%	447.2	1.75%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529/Homer	CYAAAAATAG	1e0	-1.647e-01	0.9232	578.0	2.24%	598.1	2.33%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-1.504e-01	0.9324	629.0	2.44%	652.0	2.54%
GRE(NR/IR3)/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-1.181e-01	0.9588	239.0	0.93%	256.2	1.00%
ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-1.104e-01	0.9619	5185.0	20.09%	5227.1	20.40%
NPAS2(HLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-9.591e-02	0.9717	2152.0	8.34%	2195.6	8.57%
NFkB-p50,p52(RHD)/p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e0	-6.359e-02	0.9993	234.0	0.91%	256.5	1.00%
BMAL1(HLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-3.568e-02	1.0000	3384.0	13.11%	3458.0	13.50%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-2.976e-02	1.0000	510.0	1.98%	549.2	2.14%
Mouse_Recombination_Hotspot/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-2.702e-02	1.0000	86.0	0.33%	105.0	0.41%
VDR(NR/DR3)/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-2.141e-02	1.0000	424.0	1.64%	463.1	1.81%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-1.001e-02	1.0000	54.0	0.21%	72.3	0.28%
HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-6.829e-03	1.0000	434.0	1.68%	483.9	1.89%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-6.860e-04	1.0000	9759.0	37.81%	9935.8	38.78%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-3.300e-05	1.0000	490.0	1.90%	578.3	2.26%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-1.400e-05	1.0000	1518.0	5.88%	1669.3	6.52%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-5.000e-06	1.0000	263.0	1.02%	338.6	1.32%
HIF2a(HLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-4.000e-06	1.0000	610.0	2.36%	720.2	2.81%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-0.000e+00	1.0000	1424.0	5.52%	1621.9	6.33%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-0.000e+00	1.0000	1076.0	4.17%	1253.5	4.89%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-0.000e+00	1.0000	309.0	1.20%	443.8	1.73%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	0.000e+00	1.0000	692.0	2.68%	984.2	3.84%