Information for motif17


Reverse Opposite:

p-value:1e-38
log p-value:-8.788e+01
Information Content per bp:1.704
Number of Target Sequences with motif44.0
Percentage of Target Sequences with motif0.72%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets80.4 +/- 53.4bp
Average Position of motif in Background69.4 +/- 38.1bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL003.1_GC-box/Jaspar

Match Rank:1
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:CCAGCTCCGCCT---
-NAGCCCCGCCCCCN

POL013.1_MED-1/Jaspar

Match Rank:2
Score:0.67
Offset:3
Orientation:forward strand
Alignment:CCAGCTCCGCCT
---GCTCCG---

Sp1(Zf)/Promoter/Homer

Match Rank:3
Score:0.63
Offset:2
Orientation:forward strand
Alignment:CCAGCTCCGCCT--
--GGCCCCGCCCCC

MA0079.3_SP1/Jaspar

Match Rank:4
Score:0.62
Offset:3
Orientation:forward strand
Alignment:CCAGCTCCGCCT--
---GCCCCGCCCCC

MA0516.1_SP2/Jaspar

Match Rank:5
Score:0.61
Offset:3
Orientation:forward strand
Alignment:CCAGCTCCGCCT------
---GCCCCGCCCCCTCCC

MA0162.2_EGR1/Jaspar

Match Rank:6
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---CCAGCTCCGCCT
CCCCCGCCCCCGCC-

MA0048.1_NHLH1/Jaspar

Match Rank:7
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--CCAGCTCCGCCT
NCGCAGCTGCGN--

MA0499.1_Myod1/Jaspar

Match Rank:8
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CCAGCTCCGCCT
TGCAGCTGTCCCT

PB0003.1_Ascl2_1/Jaspar

Match Rank:9
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----CCAGCTCCGCCT-
CTCAGCAGCTGCTACTG

PB0180.1_Sp4_2/Jaspar

Match Rank:10
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CCAGCTCCGCCT---
NNGGCCACGCCTTTN