Information for motif19


Reverse Opposite:

p-value:1e-32
log p-value:-7.370e+01
Information Content per bp:1.855
Number of Target Sequences with motif39.0
Percentage of Target Sequences with motif0.64%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets112.7 +/- 51.5bp
Average Position of motif in Background67.2 +/- 19.0bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.78
Offset:0
Orientation:forward strand
Alignment:ACTTCAAAGACA
ACATCAAAGG--

MA0523.1_TCF7L2/Jaspar

Match Rank:2
Score:0.78
Offset:-2
Orientation:forward strand
Alignment:--ACTTCAAAGACA
AAAGATCAAAGGAA

Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer

Match Rank:3
Score:0.77
Offset:0
Orientation:forward strand
Alignment:ACTTCAAAGACA
ACATCAAAGGNA

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:4
Score:0.77
Offset:0
Orientation:forward strand
Alignment:ACTTCAAAGACA
ACWTCAAAGG--

PB0083.1_Tcf7_1/Jaspar

Match Rank:5
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---ACTTCAAAGACA--
TATAGATCAAAGGAAAA

PB0082.1_Tcf3_1/Jaspar

Match Rank:6
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---ACTTCAAAGACA--
TATAGATCAAAGGAAAA

PB0084.1_Tcf7l2_1/Jaspar

Match Rank:7
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---ACTTCAAAGACA--
NNNAGATCAAAGGANNN

PB0040.1_Lef1_1/Jaspar

Match Rank:8
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---ACTTCAAAGACA--
NANAGATCAAAGGGNNN

MA0505.1_Nr5a2/Jaspar

Match Rank:9
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-ACTTCAAAGACA--
AAGTTCAAGGTCAGC

CHR/Cell-Cycle-Exp/Homer

Match Rank:10
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--ACTTCAAAGACA
CGGTTTCAAA----