Information for motif21


Reverse Opposite:

p-value:1e-30
log p-value:-7.094e+01
Information Content per bp:1.703
Number of Target Sequences with motif38.0
Percentage of Target Sequences with motif0.62%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets96.4 +/- 52.2bp
Average Position of motif in Background100.6 +/- 48.4bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0522.1_Tcf3/Jaspar

Match Rank:1
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-AGCAGCTTGCTG
NTGCAGCTGTG--

SCL(HLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:2
Score:0.64
Offset:0
Orientation:forward strand
Alignment:AGCAGCTTGCTG
ANCAGCTG----

Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-AGCAGCTTGCTG
CAGCAGCTGN---

ETS:E-box/HPC7-Scl-ChIP-Seq(GSE22178)/Homer

Match Rank:4
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-AGCAGCTTGCTG
CAGCTGTTTCCT-

MyoD(HLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:5
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--AGCAGCTTGCTG
NNAGCAGCTGCT--

MA0461.1_Atoh1/Jaspar

Match Rank:6
Score:0.61
Offset:2
Orientation:forward strand
Alignment:AGCAGCTTGCTG
--CAGATGGC--

Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer

Match Rank:7
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--AGCAGCTTGCTG
VNAVCAGCTGGC--

E2A(HLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer

Match Rank:8
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:AGCAGCTTGCTG
-GCAGCTGTNN-

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:9
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:AGCAGCTTGCTG
AACAGATGGC--

MyoG(HLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer

Match Rank:10
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AGCAGCTTGCTG
AACAGCTG----