Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 6120)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 4915)	% of Background Sequences with Motif
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-202	-4.662e+02	0.0000	489.0	7.99%	69.8	1.42%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-133	-3.085e+02	0.0000	1112.0	18.16%	407.9	8.27%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-130	-3.009e+02	0.0000	936.0	15.29%	316.8	6.42%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-128	-2.963e+02	0.0000	514.0	8.39%	117.5	2.38%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-116	-2.690e+02	0.0000	846.0	13.82%	286.1	5.80%
Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-76	-1.760e+02	0.0000	1005.0	16.41%	441.2	8.94%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-65	-1.511e+02	0.0000	1467.0	23.96%	765.5	15.51%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-64	-1.487e+02	0.0000	400.0	6.53%	122.4	2.48%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e-58	-1.355e+02	0.0000	1512.0	24.69%	816.7	16.55%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-54	-1.255e+02	0.0000	764.0	12.48%	340.7	6.90%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-53	-1.224e+02	0.0000	587.0	9.59%	238.4	4.83%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-48	-1.116e+02	0.0000	794.0	12.97%	372.8	7.56%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-47	-1.101e+02	0.0000	1253.0	20.46%	674.8	13.68%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-47	-1.088e+02	0.0000	551.0	9.00%	228.4	4.63%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-47	-1.082e+02	0.0000	737.0	12.04%	340.7	6.91%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-42	-9.746e+01	0.0000	504.0	8.23%	210.1	4.26%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-42	-9.692e+01	0.0000	997.0	16.28%	520.8	10.55%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-30	-6.942e+01	0.0000	223.0	3.64%	75.9	1.54%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-23	-5.335e+01	0.0000	133.0	2.17%	39.3	0.80%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-21	-4.901e+01	0.0000	91.0	1.49%	22.1	0.45%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-20	-4.805e+01	0.0000	136.0	2.22%	43.6	0.88%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-19	-4.442e+01	0.0000	122.0	1.99%	38.1	0.77%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-18	-4.335e+01	0.0000	574.0	9.37%	315.9	6.40%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-18	-4.242e+01	0.0000	335.0	5.47%	161.9	3.28%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-17	-4.080e+01	0.0000	885.0	14.45%	535.1	10.85%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-17	-3.921e+01	0.0000	279.0	4.56%	130.2	2.64%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-16	-3.865e+01	0.0000	91.0	1.49%	26.3	0.53%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-15	-3.609e+01	0.0000	1041.0	17.00%	658.6	13.35%
CTCF-SatelliteElement/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-14	-3.269e+01	0.0000	27.0	0.44%	3.8	0.08%
Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-14	-3.256e+01	0.0000	567.0	9.26%	329.4	6.68%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-13	-3.155e+01	0.0000	366.0	5.98%	195.8	3.97%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-13	-3.119e+01	0.0000	1310.0	21.39%	870.3	17.64%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-12	-2.938e+01	0.0000	358.0	5.85%	193.6	3.92%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-12	-2.932e+01	0.0000	38.0	0.62%	7.8	0.16%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-12	-2.887e+01	0.0000	197.0	3.22%	91.4	1.85%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-11	-2.744e+01	0.0000	183.0	2.99%	84.5	1.71%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-11	-2.686e+01	0.0000	200.0	3.27%	95.3	1.93%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-10	-2.445e+01	0.0000	181.0	2.96%	86.8	1.76%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-10	-2.444e+01	0.0000	402.0	6.57%	231.8	4.70%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-10	-2.430e+01	0.0000	356.0	5.81%	200.2	4.06%
FXR(NR/IR1)/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e-10	-2.315e+01	0.0000	257.0	4.20%	136.0	2.76%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-9	-2.282e+01	0.0000	573.0	9.36%	354.1	7.18%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-9	-2.249e+01	0.0000	133.0	2.17%	59.2	1.20%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-9	-2.101e+01	0.0000	646.0	10.55%	411.8	8.35%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-8	-2.029e+01	0.0000	136.0	2.22%	63.9	1.29%
Oct2(POU/Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-8	-1.875e+01	0.0000	130.0	2.12%	61.6	1.25%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-8	-1.854e+01	0.0000	369.0	6.03%	220.8	4.47%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-7	-1.661e+01	0.0000	184.0	3.01%	98.3	1.99%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-6	-1.569e+01	0.0000	330.0	5.39%	199.3	4.04%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-6	-1.555e+01	0.0000	1177.0	19.22%	826.4	16.75%
Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-6	-1.472e+01	0.0000	85.0	1.39%	38.8	0.79%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-6	-1.444e+01	0.0000	434.0	7.09%	276.6	5.61%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-6	-1.396e+01	0.0000	1285.0	20.99%	916.4	18.57%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-5	-1.360e+01	0.0000	1358.0	22.18%	974.7	19.75%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-5	-1.347e+01	0.0000	59.0	0.96%	24.7	0.50%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-5	-1.307e+01	0.0000	2416.0	39.46%	1806.5	36.61%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-5	-1.277e+01	0.0000	137.0	2.24%	73.3	1.48%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-5	-1.242e+01	0.0000	333.0	5.44%	209.8	4.25%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-5	-1.210e+01	0.0000	1278.0	20.87%	920.3	18.65%
GATA:SCL/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-5	-1.200e+01	0.0000	82.0	1.34%	39.7	0.80%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-4	-1.147e+01	0.0000	1480.0	24.17%	1080.7	21.90%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-4	-1.093e+01	0.0001	17.0	0.28%	4.4	0.09%
NRF1/Promoter/Homer	STGCGCATGCGC	1e-4	-1.091e+01	0.0001	80.0	1.31%	39.9	0.81%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-4	-1.065e+01	0.0001	614.0	10.03%	421.2	8.54%
NFkB-p65-Rel(RHD)/LPS-exp(GSE23622)/Homer	GGAAATTCCC	1e-4	-1.003e+01	0.0002	40.0	0.65%	16.7	0.34%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-4	-9.853e+00	0.0002	2347.0	38.33%	1773.2	35.94%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-4	-9.789e+00	0.0002	1114.0	18.19%	806.0	16.34%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-4	-9.671e+00	0.0002	119.0	1.94%	66.3	1.34%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-4	-9.455e+00	0.0003	675.0	11.02%	472.4	9.57%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-3	-9.189e+00	0.0004	26.0	0.42%	9.6	0.19%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-3	-9.121e+00	0.0004	1251.0	20.43%	916.5	18.58%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-3	-9.115e+00	0.0004	248.0	4.05%	157.4	3.19%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-3	-8.831e+00	0.0005	963.0	15.73%	695.4	14.09%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-3	-8.798e+00	0.0005	149.0	2.43%	88.0	1.78%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-3	-8.739e+00	0.0005	124.0	2.03%	71.6	1.45%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e-3	-8.521e+00	0.0006	215.0	3.51%	135.2	2.74%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-3	-8.506e+00	0.0006	2086.0	34.07%	1576.2	31.95%
SCL(HLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-3	-8.491e+00	0.0006	3127.0	51.07%	2408.2	48.81%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-3	-8.471e+00	0.0007	107.0	1.75%	60.7	1.23%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-3	-8.412e+00	0.0007	223.0	3.64%	141.3	2.86%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-3	-8.377e+00	0.0007	456.0	7.45%	312.7	6.34%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-3	-8.270e+00	0.0008	193.0	3.15%	120.8	2.45%
Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-3	-8.155e+00	0.0009	194.0	3.17%	121.8	2.47%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-3	-7.964e+00	0.0010	1029.0	16.81%	751.8	15.24%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-3	-7.887e+00	0.0011	448.0	7.32%	308.7	6.26%
BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer	NHAACBGYYV	1e-3	-7.876e+00	0.0011	891.0	14.55%	645.3	13.08%
E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e-3	-7.722e+00	0.0013	943.0	15.40%	686.1	13.90%
GATA-IR3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-3	-7.474e+00	0.0016	76.0	1.24%	42.0	0.85%
Ptf1a(HLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-3	-7.332e+00	0.0018	1838.0	30.02%	1389.1	28.15%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-3	-7.320e+00	0.0018	901.0	14.72%	656.2	13.30%
GFY-Staf/Promoters/Homer	RACTACAATTCCCAGAAKGC	1e-3	-7.241e+00	0.0019	16.0	0.26%	5.4	0.11%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e-3	-7.197e+00	0.0020	144.0	2.35%	88.1	1.79%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-3	-7.187e+00	0.0020	60.0	0.98%	31.3	0.63%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-3	-6.998e+00	0.0024	500.0	8.17%	351.3	7.12%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-2	-6.762e+00	0.0030	789.0	12.89%	574.0	11.63%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-2	-6.712e+00	0.0031	294.0	4.80%	198.6	4.02%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e-2	-6.463e+00	0.0040	46.0	0.75%	23.1	0.47%
Pax7-long(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e-2	-6.412e+00	0.0041	11.0	0.18%	3.7	0.07%
E2A(HLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-2	-6.343e+00	0.0044	1077.0	17.59%	799.4	16.20%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-2	-6.319e+00	0.0044	88.0	1.44%	51.5	1.04%
PAX5(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-2	-6.299e+00	0.0045	209.0	3.41%	137.1	2.78%
NF1:FOXA1/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-2	-6.260e+00	0.0046	36.0	0.59%	17.6	0.36%
GATA-IR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-2	-6.246e+00	0.0046	44.0	0.72%	22.5	0.46%
ETS:E-box/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-2	-5.807e+00	0.0071	63.0	1.03%	35.1	0.71%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-2	-5.770e+00	0.0073	336.0	5.49%	233.4	4.73%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-2	-5.718e+00	0.0076	122.0	1.99%	76.4	1.55%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e-2	-5.671e+00	0.0079	444.0	7.25%	315.7	6.40%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-2	-5.618e+00	0.0083	589.0	9.62%	426.1	8.63%
Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-2	-5.335e+00	0.0109	763.0	12.46%	562.0	11.39%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e-2	-5.290e+00	0.0113	10.0	0.16%	3.2	0.07%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e-2	-5.192e+00	0.0122	48.0	0.78%	26.5	0.54%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e-2	-5.192e+00	0.0122	48.0	0.78%	26.5	0.54%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-2	-5.148e+00	0.0126	331.0	5.41%	232.5	4.71%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-2	-5.127e+00	0.0128	1069.0	17.46%	802.5	16.26%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-2	-5.072e+00	0.0134	731.0	11.94%	539.7	10.94%
BMAL1(HLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-2	-5.054e+00	0.0135	916.0	14.96%	683.7	13.86%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-2	-4.903e+00	0.0156	894.0	14.60%	667.0	13.52%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-2	-4.725e+00	0.0185	1066.0	17.41%	803.6	16.29%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-1	-4.470e+00	0.0237	1919.0	31.34%	1480.1	30.00%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-1	-4.203e+00	0.0307	199.0	3.25%	137.3	2.78%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-1	-4.061e+00	0.0350	949.0	15.50%	717.6	14.54%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-1	-4.030e+00	0.0358	380.0	6.21%	275.1	5.58%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-1	-4.020e+00	0.0359	406.0	6.63%	295.9	6.00%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-1	-3.930e+00	0.0390	478.0	7.81%	351.3	7.12%
HNF4a(NR/DR1)/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-1	-3.765e+00	0.0456	331.0	5.41%	239.2	4.85%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-1	-3.729e+00	0.0469	252.0	4.12%	179.7	3.64%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e-1	-3.712e+00	0.0473	1329.0	21.71%	1020.4	20.68%
FOXA1:AR/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-1	-3.691e+00	0.0479	28.0	0.46%	15.2	0.31%
VDR(NR/DR3)/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e-1	-3.552e+00	0.0547	104.0	1.70%	69.1	1.40%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-1	-3.433e+00	0.0611	113.0	1.85%	76.9	1.56%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-1	-3.365e+00	0.0649	264.0	4.31%	190.0	3.85%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-1	-3.331e+00	0.0667	794.0	12.97%	602.6	12.21%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-1	-3.273e+00	0.0701	296.0	4.83%	215.1	4.36%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-1	-3.266e+00	0.0701	603.0	9.85%	453.5	9.19%
c-Myc/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-1	-3.244e+00	0.0711	233.0	3.81%	167.4	3.39%
Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-1	-3.128e+00	0.0793	165.0	2.69%	116.5	2.36%
E-box(HLH)/Promoter/Homer	SSGGTCACGTGA	1e-1	-3.113e+00	0.0798	54.0	0.88%	34.6	0.70%
USF1(HLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-1	-3.066e+00	0.0831	254.0	4.15%	184.2	3.73%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-1	-3.015e+00	0.0868	413.0	6.75%	307.2	6.23%
bHLHE40(HLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-1	-3.013e+00	0.0868	163.0	2.66%	115.2	2.33%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-1	-2.818e+00	0.1042	348.0	5.68%	258.2	5.23%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-1	-2.748e+00	0.1110	741.0	12.10%	566.6	11.48%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-1	-2.731e+00	0.1121	156.0	2.55%	111.7	2.26%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-1	-2.668e+00	0.1186	30.0	0.49%	19.0	0.39%
c-Myc(HLH)/LNCAP-cMyc-ChIP-Seq(unpublished)/Homer	VCCACGTG	1e-1	-2.658e+00	0.1189	234.0	3.82%	171.2	3.47%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-1	-2.548e+00	0.1318	303.0	4.95%	225.7	4.57%
MyoD(HLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-1	-2.395e+00	0.1526	584.0	9.54%	446.6	9.05%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-2.205e+00	0.1833	198.0	3.23%	146.9	2.98%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-2.115e+00	0.1991	1311.0	21.41%	1026.8	20.81%
GRE/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-2.108e+00	0.1993	131.0	2.14%	95.0	1.93%
ERE(NR/IR3)/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-2.073e+00	0.2049	149.0	2.43%	109.3	2.21%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-2.046e+00	0.2092	630.0	10.29%	486.7	9.86%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-2.044e+00	0.2092	3.0	0.05%	0.0	0.00%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-2.040e+00	0.2092	24.0	0.39%	15.7	0.32%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-2.040e+00	0.2092	24.0	0.39%	15.4	0.31%
bZIP:IRF/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-2.021e+00	0.2092	181.0	2.96%	134.8	2.73%
GATA-DR8(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-2.017e+00	0.2092	35.0	0.57%	23.2	0.47%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e0	-1.992e+00	0.2123	213.0	3.48%	159.9	3.24%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-1.992e+00	0.2123	514.0	8.39%	395.1	8.01%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-1.893e+00	0.2316	280.0	4.57%	212.3	4.30%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-1.856e+00	0.2389	1761.0	28.76%	1390.2	28.18%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-1.793e+00	0.2527	534.0	8.72%	413.3	8.38%
Max(HLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-1.779e+00	0.2548	331.0	5.41%	253.7	5.14%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-1.697e+00	0.2749	670.0	10.94%	522.3	10.59%
GATA-DR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-1.499e+00	0.3331	37.0	0.60%	26.6	0.54%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-1.478e+00	0.3379	739.0	12.07%	580.2	11.76%
STAT6/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-1.478e+00	0.3379	269.0	4.39%	207.3	4.20%
TRa(NR)/C17.2-TRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-1.424e+00	0.3526	243.0	3.97%	187.7	3.80%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-1.323e+00	0.3875	1301.0	21.25%	1032.9	20.93%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-1.322e+00	0.3875	57.0	0.93%	42.7	0.87%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e0	-1.311e+00	0.3878	432.0	7.06%	339.0	6.87%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-1.275e+00	0.3998	58.0	0.95%	43.0	0.87%
MyoG(HLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-1.254e+00	0.4059	762.0	12.44%	602.3	12.21%
Pax7(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-1.249e+00	0.4059	28.0	0.46%	21.0	0.42%
CEBP(bZIP)/CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-1.248e+00	0.4059	256.0	4.18%	199.7	4.05%
TR4(NR/DR1)/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-1.191e+00	0.4246	92.0	1.50%	70.6	1.43%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-1.183e+00	0.4259	144.0	2.35%	111.8	2.27%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-1.164e+00	0.4314	695.0	11.35%	550.5	11.16%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-1.160e+00	0.4314	25.0	0.41%	18.3	0.37%
E2F(E2F)/Cell-Cycle-Exp/Homer	TTSGCGCGAAAA	1e0	-1.140e+00	0.4369	21.0	0.34%	15.7	0.32%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e0	-1.137e+00	0.4369	296.0	4.83%	232.1	4.70%
Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-1.109e+00	0.4458	104.0	1.70%	81.0	1.64%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-1.098e+00	0.4483	741.0	12.10%	588.3	11.92%
PPARE(NR/DR1)/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-1.085e+00	0.4518	642.0	10.49%	509.7	10.33%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-1.067e+00	0.4575	1011.0	16.51%	806.0	16.33%
Pax8(Paired/Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-1.049e+00	0.4632	203.0	3.32%	160.0	3.24%
Egr2/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-1.025e+00	0.4720	107.0	1.75%	83.7	1.70%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529/Homer	CYAAAAATAG	1e0	-9.782e-01	0.4920	138.0	2.25%	108.5	2.20%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-9.728e-01	0.4920	109.0	1.78%	85.7	1.74%
HIF2a(HLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-9.713e-01	0.4920	153.0	2.50%	120.7	2.45%
HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-9.661e-01	0.4920	119.0	1.94%	93.5	1.90%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-9.488e-01	0.4961	273.0	4.46%	216.9	4.40%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-8.351e-01	0.5530	175.0	2.86%	139.0	2.82%
Srebp1a(HLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-8.341e-01	0.5530	95.0	1.55%	75.5	1.53%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-8.189e-01	0.5562	12.0	0.20%	9.8	0.20%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-7.999e-01	0.5640	253.0	4.13%	202.9	4.11%
OCT4-SOX2-TCF-NANOG((POU/Homeobox/HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-7.853e-01	0.5694	47.0	0.77%	37.1	0.75%
NPAS2(HLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-7.749e-01	0.5724	566.0	9.24%	454.3	9.21%
ETS:RUNX/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-7.215e-01	0.6008	44.0	0.72%	35.3	0.72%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-7.090e-01	0.6053	301.0	4.92%	242.2	4.91%
Ap4(HLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-7.033e-01	0.6058	857.0	14.00%	690.4	13.99%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-6.920e-01	0.6096	148.0	2.42%	119.9	2.43%
ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-6.512e-01	0.6319	1200.0	19.60%	968.8	19.63%
GLI3(Zf)/GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-5.891e-01	0.6691	65.0	1.06%	53.8	1.09%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-5.210e-01	0.7127	41.0	0.67%	34.7	0.70%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-4.875e-01	0.7334	249.0	4.07%	204.7	4.15%
n-Myc(HLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-4.703e-01	0.7426	331.0	5.41%	271.8	5.51%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-4.600e-01	0.7466	209.0	3.41%	172.5	3.50%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-4.430e-01	0.7558	140.0	2.29%	116.6	2.36%
NFAT:AP1/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-4.289e-01	0.7629	63.0	1.03%	53.1	1.08%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-4.138e-01	0.7708	263.0	4.30%	217.2	4.40%
RXR(NR/DR1)/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-4.040e-01	0.7747	782.0	12.77%	639.5	12.96%
GRE(NR/IR3)/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-3.998e-01	0.7747	65.0	1.06%	55.5	1.13%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-3.853e-01	0.7819	223.0	3.64%	185.6	3.76%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-3.736e-01	0.7875	230.0	3.76%	191.6	3.88%
CLOCK(HLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-3.417e-01	0.8092	273.0	4.46%	227.2	4.60%
Reverb(NR/DR2)/BLRP(RAW)-Reverba-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-2.951e-01	0.8439	80.0	1.31%	69.1	1.40%
PAX3:FKHR-fusion(Paired/Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-2.931e-01	0.8439	68.0	1.11%	59.3	1.20%
RBPJ:Ebox/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-2.778e-01	0.8508	199.0	3.25%	168.0	3.40%
Srebp2(HLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-2.494e-01	0.8714	60.0	0.98%	53.3	1.08%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-2.212e-01	0.8922	168.0	2.74%	144.7	2.93%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-2.133e-01	0.8953	71.0	1.16%	63.0	1.28%
PAX5-shortForm(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-2.131e-01	0.8953	51.0	0.83%	46.7	0.95%
PRDM1/BMI1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-2.098e-01	0.8953	252.0	4.12%	214.7	4.35%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-1.805e-01	0.9128	76.0	1.24%	68.5	1.39%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-1.742e-01	0.9145	393.0	6.42%	332.6	6.74%
Mouse_Recombination_Hotspot/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-1.457e-01	0.9367	21.0	0.34%	21.6	0.44%
Pax7-longest(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-1.435e-01	0.9367	4.0	0.07%	5.7	0.11%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-1.081e-01	0.9642	2461.0	40.19%	2023.0	41.00%
ISRE(IRF)/ThioMac-LPS-exp(GSE23622)/HOMER	AGTTTCASTTTC	1e0	-1.059e-01	0.9642	18.0	0.29%	19.8	0.40%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-8.787e-02	0.9754	84.0	1.37%	78.4	1.59%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-8.605e-02	0.9754	377.0	6.16%	325.5	6.60%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-8.309e-02	0.9754	502.0	8.20%	429.1	8.70%
CHR/Cell-Cycle-Exp/Homer	SRGTTTCAAA	1e0	-8.217e-02	0.9754	233.0	3.81%	205.3	4.16%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-8.080e-02	0.9754	94.0	1.54%	87.6	1.78%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-6.145e-02	0.9803	45.0	0.73%	45.9	0.93%
NFkB-p50,p52(RHD)/p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e0	-4.011e-02	0.9972	58.0	0.95%	58.3	1.18%
LXRE(NR/DR4)/BLRP(RAW)-LXRb-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-3.795e-02	0.9972	38.0	0.62%	40.6	0.82%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-2.594e-02	1.0000	1122.0	18.32%	952.3	19.30%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-2.549e-02	1.0000	124.0	2.03%	118.9	2.41%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-2.242e-02	1.0000	11.0	0.18%	15.7	0.32%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-1.104e-02	1.0000	199.0	3.25%	187.6	3.80%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-5.852e-03	1.0000	358.0	5.85%	327.7	6.64%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-3.511e-03	1.0000	292.0	4.77%	273.6	5.55%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-3.018e-03	1.0000	31.0	0.51%	39.2	0.80%
T1ISRE(IRF)/Ifnb-Exp/Homer	ACTTTCGTTTCT	1e0	0.000e+00	1.0000	0.0	0.00%	0.6	0.01%