Information for motif1


Reverse Opposite:

p-value:1e-187
log p-value:-4.312e+02
Information Content per bp:1.750
Number of Target Sequences with motif369.0
Percentage of Target Sequences with motif6.03%
Number of Background Sequences with motif356.5
Percentage of Background Sequences with motif0.82%
Average Position of motif in Targets97.9 +/- 47.9bp
Average Position of motif in Background93.5 +/- 55.8bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.92
Offset:-7
Orientation:forward strand
Alignment:-------GCCMYCTRGTGG-
CNNBRGCGCCCCCTGSTGGC

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer

Match Rank:2
Score:0.92
Offset:-5
Orientation:forward strand
Alignment:-----GCCMYCTRGTGG---
ANAGTGCCACCTGGTGGCCA

MA0139.1_CTCF/Jaspar

Match Rank:3
Score:0.92
Offset:-4
Orientation:reverse strand
Alignment:----GCCMYCTRGTGG---
TAGCGCCCCCTGGTGGCCA

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:4
Score:0.65
Offset:0
Orientation:forward strand
Alignment:GCCMYCTRGTGG
GCCATCTGTT--

MA0461.1_Atoh1/Jaspar

Match Rank:5
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GCCMYCTRGTGG
GCCATCTG----

Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GCCMYCTRGTGG-
-CCCCCTGCTGTG

PB0076.1_Sp4_1/Jaspar

Match Rank:7
Score:0.61
Offset:-6
Orientation:forward strand
Alignment:------GCCMYCTRGTGG
GGTCCCGCCCCCTTCTC-

PB0101.1_Zic1_1/Jaspar

Match Rank:8
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GCCMYCTRGTGG--
CCCCCCCGGGGGNN

MA0095.2_YY1/Jaspar

Match Rank:9
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---GCCMYCTRGTGG
GCNGCCATCTTG---

YY1(Zf)/Promoter/Homer

Match Rank:10
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---GCCMYCTRGTGG
GCCGCCATCTTG---