Information for motif13


Reverse Opposite:

p-value:1e-16
log p-value:-3.788e+01
Information Content per bp:1.651
Number of Target Sequences with motif479.0
Percentage of Target Sequences with motif7.82%
Number of Background Sequences with motif2301.8
Percentage of Background Sequences with motif5.27%
Average Position of motif in Targets102.1 +/- 56.6bp
Average Position of motif in Background100.2 +/- 58.9bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.91
Offset:-1
Orientation:forward strand
Alignment:-CTTCAAAG-
ACATCAAAGG

MA0523.1_TCF7L2/Jaspar

Match Rank:2
Score:0.89
Offset:-3
Orientation:forward strand
Alignment:---CTTCAAAG---
AAAGATCAAAGGAA

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:3
Score:0.88
Offset:-1
Orientation:forward strand
Alignment:-CTTCAAAG-
ACWTCAAAGG

Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer

Match Rank:4
Score:0.87
Offset:-1
Orientation:forward strand
Alignment:-CTTCAAAG---
ACATCAAAGGNA

PB0082.1_Tcf3_1/Jaspar

Match Rank:5
Score:0.86
Offset:-4
Orientation:forward strand
Alignment:----CTTCAAAG-----
TATAGATCAAAGGAAAA

PB0084.1_Tcf7l2_1/Jaspar

Match Rank:6
Score:0.86
Offset:-4
Orientation:reverse strand
Alignment:----CTTCAAAG-----
NNNAGATCAAAGGANNN

PB0083.1_Tcf7_1/Jaspar

Match Rank:7
Score:0.84
Offset:-4
Orientation:forward strand
Alignment:----CTTCAAAG-----
TATAGATCAAAGGAAAA

PB0040.1_Lef1_1/Jaspar

Match Rank:8
Score:0.83
Offset:-4
Orientation:reverse strand
Alignment:----CTTCAAAG-----
NANAGATCAAAGGGNNN

CHR/Cell-Cycle-Exp/Homer

Match Rank:9
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---CTTCAAAG
CGGTTTCAAA-

MA0484.1_HNF4G/Jaspar

Match Rank:10
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---CTTCAAAG----
AGAGTCCAAAGTCCA