Information for motif15


Reverse Opposite:

p-value:1e-11
log p-value:-2.645e+01
Information Content per bp:1.974
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.13%
Number of Background Sequences with motif0.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets77.6 +/- 40.1bp
Average Position of motif in Background35.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0077.1_SOX9/Jaspar

Match Rank:1
Score:0.84
Offset:1
Orientation:forward strand
Alignment:ACTATTGTTC
-CCATTGTTC

PB0072.1_Sox5_1/Jaspar

Match Rank:2
Score:0.80
Offset:-2
Orientation:reverse strand
Alignment:--ACTATTGTTC----
NNTTTATTGTTCTNNN

PB0065.1_Sox15_1/Jaspar

Match Rank:3
Score:0.80
Offset:-3
Orientation:reverse strand
Alignment:---ACTATTGTTC----
ANNTCTATTGTTCNNNA

PB0073.1_Sox7_1/Jaspar

Match Rank:4
Score:0.80
Offset:-6
Orientation:reverse strand
Alignment:------ACTATTGTTC------
TNNANNTCTATTGTTNTNNANN

PB0173.1_Sox21_2/Jaspar

Match Rank:5
Score:0.79
Offset:-2
Orientation:forward strand
Alignment:--ACTATTGTTC-----
AATCAATTGTTCCGCTA

PB0183.1_Sry_2/Jaspar

Match Rank:6
Score:0.79
Offset:-2
Orientation:reverse strand
Alignment:--ACTATTGTTC-----
CNNNTATTGTTCNNNNN

PB0063.1_Sox13_1/Jaspar

Match Rank:7
Score:0.78
Offset:-2
Orientation:reverse strand
Alignment:--ACTATTGTTC----
AANTTATTGTTCTNNA

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.77
Offset:0
Orientation:forward strand
Alignment:ACTATTGTTC
NCCATTGTTC

PB0074.1_Sox8_1/Jaspar

Match Rank:9
Score:0.77
Offset:-3
Orientation:forward strand
Alignment:---ACTATTGTTC----
GTATCTATTGTTCTTTA

PB0070.1_Sox30_1/Jaspar

Match Rank:10
Score:0.76
Offset:-3
Orientation:reverse strand
Alignment:---ACTATTGTTC---
ANNTCCATTGTTCNNN