Information for motif18


Reverse Opposite:

p-value:1e-10
log p-value:-2.309e+01
Information Content per bp:1.865
Number of Target Sequences with motif34.0
Percentage of Target Sequences with motif0.56%
Number of Background Sequences with motif63.7
Percentage of Background Sequences with motif0.15%
Average Position of motif in Targets100.4 +/- 52.3bp
Average Position of motif in Background113.0 +/- 52.4bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0160.1_NR4A2/Jaspar

Match Rank:1
Score:0.66
Offset:0
Orientation:forward strand
Alignment:AAGTTCACCA
AAGGTCAC--

PB0081.1_Tcf1_1/Jaspar

Match Rank:2
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---AAGTTCACCA----
ACTTAGTTAACTAAAAA

PB0053.1_Rara_1/Jaspar

Match Rank:3
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----AAGTTCACCA-
TCTCAAAGGTCACCTG

MA0592.1_ESRRA/Jaspar

Match Rank:4
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--AAGTTCACCA
CCAAGGTCACA-

PH0167.1_Tcf1/Jaspar

Match Rank:5
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----AAGTTCACCA---
NTTTTAGTTAACNNAGN

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--AAGTTCACCA
TCAAGGTCAN--

PH0040.1_Hmbox1/Jaspar

Match Rank:7
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-AAGTTCACCA------
GANGTTAACTAGTTTNN

PH0168.1_Hnf1b/Jaspar

Match Rank:8
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--AAGTTCACCA-----
AGCTGTTAACTAGCCGT

PB0026.1_Gm397_1/Jaspar

Match Rank:9
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----AAGTTCACCA---
NNGTATGTGCACATNNN

MA0017.1_NR2F1/Jaspar

Match Rank:10
Score:0.60
Offset:-7
Orientation:reverse strand
Alignment:-------AAGTTCACCA
AGGTTCAAAGGTCA---