Information for motif19


Reverse Opposite:

p-value:1e-9
log p-value:-2.140e+01
Information Content per bp:1.937
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif0.16%
Number of Background Sequences with motif5.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets98.2 +/- 50.6bp
Average Position of motif in Background111.4 +/- 38.1bp
Strand Bias (log2 ratio + to - strand density)2.5
Multiplicity (# of sites on avg that occur together)1.44
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:1
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--GCCCACAGGAGT
NTGCCCANNGGTNA

POL009.1_DCE_S_II/Jaspar

Match Rank:2
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:GCCCACAGGAGT
---CACAGN---

MA0002.2_RUNX1/Jaspar

Match Rank:3
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GCCCACAGGAGT
AAACCACAGAN--

PB0203.1_Zfp691_2/Jaspar

Match Rank:4
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:GCCCACAGGAGT------
-NTNNNAGGAGTCTCNTN

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:5
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GCCCACAGGAGT
NWAACCACADNN--

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GCCCACAGGAGT
ATGCCCTGAGGC--

Egr2/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer

Match Rank:7
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---GCCCACAGGAGT
YCCGCCCACGCN---

AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer

Match Rank:8
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GCCCACAGGAGT
WTGSCCTSAGGS--

MA0597.1_THAP1/Jaspar

Match Rank:9
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GCCCACAGGAGT
CTGCCCGCA-----

Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer

Match Rank:10
Score:0.56
Offset:3
Orientation:forward strand
Alignment:GCCCACAGGAGT-
---AACAGGAAGT